Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens (Q36032792)

11 August 2017

Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens (English)

1 reference

11 August 2017

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D Wragg

1

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11 August 2017

J M Mwacharo

2

1 reference

11 August 2017

J A Alcalde

3

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11 August 2017

P M Hocking

4

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11 August 2017

O Hanotte

5

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11 August 2017

language of work or name

English

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publication date

7 March 2012

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11 August 2017

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11 August 2017

109

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11 August 2017

1

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11 August 2017

6-18

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The development and characterization of a 60K SNP chip for chicken.

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Hypothalamic dysregulation and infertility in mice lacking the homeodomain protein Six6.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Mitochondrial DNA reveals multiple introductions of domestic chicken in East Africa.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Linkage disequilibrium reveals different demographic history in egg laying chickens

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Production objectives and trait preferences of village poultry producers of Ethiopia: implications for designing breeding schemes utilizing indigenous chicken genetic resources.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Whole-genome resequencing reveals loci under selection during chicken domestication

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Xenobiotic, bile acid, and cholesterol transporters: function and regulation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Tracking footprints of artificial selection in the dog genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Basonuclin-2 requirements for zebrafish adult pigment pattern development and female fertility

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Genetic mapping of fixed phenotypes: disease frequency as a breed characteristic

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Extraction and analysis of colourful eggshell pigments using HPLC and HPLC/electrospray ionization tandem mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Efficient mapping of mendelian traits in dogs through genome-wide association

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

PLINK: a tool set for whole-genome association and population-based linkage analyses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Mapping, fine mapping, and molecular dissection of quantitative trait Loci in domestic animals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

GenABEL: an R library for genome-wide association analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Inheritance of Earlobe Color in Poultry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Genome sequence, comparative analysis and haplotype structure of the domestic dog

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Developmental regulation of gonadotropin-releasing hormone gene expression by the MSX and DLX homeodomain protein families

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Extensive and breed-specific linkage disequilibrium in Canis familiaris

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Patterns of linkage disequilibrium in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Linkage disequilibrium in humans: models and data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Inference of population structure using multilocus genotype data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

The role of retinoids in normal and abnormal embryonic craniofacial morphogenesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Sonic hedgehog participates in craniofacial morphogenesis and is down-regulated by teratogenic doses of retinoic acid

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Localisation of the genomic sequence interval for the blue eggshell gene using an F2 resource population of Dongxiang chickens.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Genomic regions associated with dermal hyperpigmentation, polydactyly and other morphological traits in the Silkie chicken

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Comparison of the total amount of eggshell pigments in Dongxiang brown-shelled eggs and Dongxiang blue-shelled eggs.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Domesticating Animals in Africa: Implications of Genetic and Archaeological Findings

23 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2012.9

Genetic studies in poultry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2012.9

Characterization of the genetic diversity, structure and admixture of British chicken breeds

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3375411

Identification of a sperm cell attribute responsible for subfertility of roosters homozygous for the rose comb allele

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22395157

12 December 2020

inferred from PubMed ID database lookup

Duplex comb in the chicken: a multi-allelic trait

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22395157

12 December 2020

inferred from PubMed ID database lookup

Linkage disequilibrium in finite populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22395157

12 December 2020

inferred from PubMed ID database lookup

Mitochondrial DNAs provide insight into trypanosome phylogeny and molecular evolution

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2012.9

7 January 2021

inferred from DOI database lookup

Recombination rates across porcine autosomes inferred from high-density linkage maps.

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2012.9

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/HDY.2012.9

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

22395157

1 reference