Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers (Q36054428)

11 August 2017

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers (English)

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11 August 2017

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4

Mehrdad Hajibabaei

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11 August 2017

3

Donald J Baird

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11 August 2017

2

Shadi Shokralla

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11 August 2017

Nicole A Fahner

1

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PMC publication ID

4911152

11 August 2017

language of work or name

English

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publication date

16 June 2016

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11 August 2017

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11 August 2017

11

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11 August 2017

6

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11 August 2017

e0157505

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Creative Commons Attribution 4.0 International

11 August 2017

start time

16 June 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4911152

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

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1 reference

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1 reference

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

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1 reference

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DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

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1 reference

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Challenges to barcoding an entire flora

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1 reference

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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

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1 reference

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1 reference

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Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA

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1 reference

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1 reference

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1 reference

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DNA from soil mirrors plant taxonomic and growth form diversity

2 October 2017

1 reference

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Bioinformatic challenges for DNA metabarcoding of plants and animals

2 October 2017

1 reference

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New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

2 October 2017

1 reference

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1 reference

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Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

2 October 2017

1 reference

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Refining the DNA barcode for land plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4911152

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

2 October 2017

1 reference

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ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

2 October 2017

1 reference

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Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

2 October 2017

1 reference

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Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

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1 reference

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Quality control and preprocessing of metagenomic datasets

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1 reference

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Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

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1 reference

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1 reference

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Search and clustering orders of magnitude faster than BLAST

2 October 2017

1 reference

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ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

2 October 2017

1 reference

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Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

2 October 2017

1 reference

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A DNA barcode for land plants

2 October 2017

1 reference

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Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

2 October 2017

1 reference

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Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding

2 October 2017

1 reference

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Defining operational taxonomic units using DNA barcode data

2 October 2017

1 reference

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Diverse plant and animal genetic records from Holocene and Pleistocene sediments

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1 reference

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A greedy algorithm for aligning DNA sequences

2 October 2017

1 reference

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How to limit false positives in environmental DNA and metabarcoding?

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1 reference

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Forensic soil DNA analysis using high-throughput sequencing: a comparison of four molecular markers.

23 September 2018

1 reference

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Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

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1 reference

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21 January 2018

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21 January 2018

Identifiers

DOI

1 reference

11 August 2017

0 references

1 reference

PMC publication ID

4911152

11 August 2017

PubMed publication ID

27310720

1 reference

PMC publication ID

4911152