Assembling global maps of cellular function through integrative analysis of physical and genetic networks (Q36057839)

11 August 2017

Assembling global maps of cellular function through integrative analysis of physical and genetic networks (English)

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11 August 2017

7

Trey Ideker

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11 August 2017

6

Michael Smoot

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11 August 2017

Rohith Srivas

1

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11 August 2017

Gregory Hannum

2

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11 August 2017

Johannes Ruscheinski

3

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11 August 2017

Keiichoro Ono

4

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11 August 2017

Peng-Liang Wang

5

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11 August 2017

11 August 2011

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11 August 2017

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11 August 2017

6

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9

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11 August 2017

1308-1323

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describes a project that uses

11 August 2017

Cytoscape

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9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nprot.2011.368

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cites work

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Cytoscape 2.8: new features for data integration and network visualization

2 October 2017

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Rewiring of genetic networks in response to DNA damage.

2 October 2017

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Modularity and directionality in genetic interaction maps

2 October 2017

1 reference

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The genetic landscape of a cell

2 October 2017

1 reference

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The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

2 October 2017

1 reference

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Functional organization of the S. cerevisiae phosphorylation network

2 October 2017

1 reference

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A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

2 October 2017

1 reference

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Phosphorylation networks regulating JNK activity in diverse genetic backgrounds

2 October 2017

1 reference

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Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

2 October 2017

1 reference

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Cytoscape ESP: simple search of complex biological networks

2 October 2017

1 reference

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Functional maps of protein complexes from quantitative genetic interaction data

2 October 2017

1 reference

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Cancer proliferation gene discovery through functional genomics.

2 October 2017

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The BioGRID Interaction Database: 2008 update

2 October 2017

1 reference

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Integration of biological networks and gene expression data using Cytoscape

2 October 2017

1 reference

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Population genomics of human gene expression

2 October 2017

1 reference

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Integrating physical and genetic maps: from genomes to interaction networks

2 October 2017

1 reference

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Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

2 October 2017

1 reference

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Exploring genetic interactions and networks with yeast

2 October 2017

1 reference

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Identifying functional modules in the physical interactome of Saccharomyces cerevisiae

2 October 2017

1 reference

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

2 October 2017

1 reference

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Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes

2 October 2017

1 reference

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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

2 October 2017

1 reference

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Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions

2 October 2017

1 reference

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TM4 microarray software suite

2 October 2017

1 reference

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A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

A DNA integrity network in the yeast Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network

2 October 2017

1 reference

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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

2 October 2017

1 reference

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Systematic interpretation of genetic interactions using protein networks

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

Global mapping of the yeast genetic interaction network

2 October 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

2 October 2017

1 reference

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Gene ontology: tool for the unification of biology

2 October 2017

1 reference

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Up-to-date catalogues of yeast protein complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383003

11 July 2018

Identifiers

DOI

10.1038/NPROT.2011.368

1 reference

11 August 2017

1 reference

11 August 2017

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