Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes. (Q36079882)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10856247%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

title

Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10856247%20AND%20SRC:MED&resulttype=core&format=json

Sivaramesh Wigneshweraraj

7 November 2019

author

1

1 reference

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7 November 2019

author name string

N Fujita

2

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7 November 2019

A Ishihama

3

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7 November 2019

M Buck

4

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7 November 2019

language of work or name

English

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publication date

1 June 2000

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7 November 2019

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7 November 2019

volume

19

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7 November 2019

issue

12

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7 November 2019

page(s)

3038-3048

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The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

7 November 2019

cites work

1 reference

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Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

2 October 2017

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Systematic analysis of sigma54 N-terminal sequences identifies regions involved in positive and negative regulation of transcription

2 October 2017

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2 October 2017

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Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization

2 October 2017

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Identification of an N-terminal region of sigma 54 required for enhancer responsiveness

2 October 2017

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Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease

2 October 2017

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Probing the assembly of transcription initiation complexes through changes in sigmaN protease sensitivity

2 October 2017

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Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: roles for DNA and protein determinants

2 October 2017

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Modular organization of the catalytic center of RNA polymerase

2 October 2017

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Two domains within sigmaN (sigma54) cooperate for DNA binding

2 October 2017

1 reference

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Isolation and properties of enhancer-bypass mutants of sigma 54.

2 October 2017

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DNA-binding determinants of sigma 54 as deduced from libraries of mutations

2 October 2017

1 reference

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Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110.

2 October 2017

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Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon

2 October 2017

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Binding of the sigma 70 protein to the core subunits of Escherichia coli RNA polymerase, studied by iron-EDTA protein footprinting

2 October 2017

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Identification of a DNA-contacting surface in the transcription factor sigma-54.

2 October 2017

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In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).

2 October 2017

1 reference

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PCR mutagenesis identifies a polymerase-binding sequence of sigma 54 that includes a sigma 70 homology region

2 October 2017

1 reference

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Transfer of oxygen from an artificial protease to peptide carbon during proteolysis

2 October 2017

1 reference

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The Bacillus subtilis sigL gene encodes an equivalent of sigma 54 from gram-negative bacteria

2 October 2017

1 reference

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The helix-turn-helix motif of sigma 54 is involved in recognition of the -13 promoter region

2 October 2017

1 reference

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Targeted protein footprinting: where different transcription factors bind to RNA polymerase

2 October 2017

1 reference

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A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor

11 July 2018

1 reference

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Sequences in sigmaN determining holoenzyme formation and properties

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Cloning and characterization of Planctomyces limnophilus rpoN: complementation of a Salmonella typhimurium rpoN mutant strain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Mapping of catalytic residues in the RNA polymerase active center

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Functional roles for the glutamines within the glutamine-rich region of the transcription factor sigma 54.

11 July 2018

1 reference

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A microfluorometric assay for cholinesterases, suitable for multiple kinetic determinations of picomoles of released thiocholine.

11 July 2018

1 reference

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Promoter selectivity of Escherichia coli RNA polymerase. Purification and properties of holoenzyme containing the heat-shock sigma subunit.

11 July 2018

1 reference

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Positive and negative effects of DNA bending on activation of transcription from a distant site

11 July 2018

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Sequences in sigma(54) region I required for binding to early melted DNA and their involvement in sigma-DNA isomerisation.

11 July 2018

1 reference

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The sigma 54 DNA-binding domain includes a determinant of enhancer responsiveness.

23 September 2018

1 reference

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Dimeric association of Escherichia coli RNA polymerase alpha subunits, studied by cleavage of single-cysteine alpha subunits conjugated to iron-(S)-1-[p-(bromoacetamido)benzyl]ethylenediaminetetraacetate

23 September 2018

1 reference

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Synthesis of the protein cutting reagent iron (S)-1-(p-bromoacetamidobenzyl)ethylenediaminetetraacetate and conjugation to cysteine side chains

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Promoter selectivity of Escherichia coli RNA polymerase E sigma 70 and E sigma 38 holoenzymes. Effect of DNA supercoiling.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Analysis of the N-terminal leucine heptad and hexad repeats of sigma 54.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

The domain structure of sigma 54 as determined by analysis of a set of deletion mutants

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Converting Escherichia coli RNA polymerase into an enhancer-responsive enzyme: role of an NH2-terminal leucine patch in sigma 54.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

Role of eukaryotic-type functional domains found in the prokaryotic enhancer receptor factor sigma 54.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203346

The RpoN-box motif of the RNA polymerase sigma factor sigma N plays a role in promoter recognition

23 September 2018

1 reference

12 December 2020

Molecular anatomy of the beta' subunit of the E. coli RNA polymerase: identification of regions involved in polymerase assembly

1 reference

12 December 2020

Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

1 reference

12 December 2020

Region I modifies DNA-binding domain conformation of sigma 54 within the holoenzyme

1 reference

12 December 2020

Functions of the ς54Region Iin Transand Implications for Transcription Activation

1 reference

12 December 2020

Mapping of subunit-subunit contact surfaces on the beta' subunit of Escherichia coli RNA polymerase

1 reference

12 December 2020

Low Resolution Structure of the ς54 Transcription Factor Revealed by X-ray Solution Scattering

1 reference

12 December 2020

Specific Chemical Cleavage in High Yield at the Amino Peptide Bonds of Cysteine and Cystine Residues

1 reference

12 December 2020

Studies of the functional topography of Escherichia coli RNA polymerase. A method for localization of the sites of affinity labelling

1 reference

12 December 2020

Cassette mutagenesis implicates a helix-turn-helix motif in promoter recognition by the novel RNA polymerase sigma factor sigma 54

1 reference

12 December 2020

Core RNA polymerase and promoter DNA interactions of purified domains of sigma N: bipartite functions

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/19.12.3038

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10856247%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10856247%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

PubMed publication ID

10856247

1 reference