A dynamic programming algorithm for finding alternative RNA secondary structures (Q36087904)

12 August 2017

A dynamic programming algorithm for finding alternative RNA secondary structures (English)

1 reference

12 August 2017

A L Williams

1

1 reference

PMCID

339410

12 August 2017

I Tinoco

series ordinal

2

1 reference

PMCID

339410

12 August 2017

language of work or name

English

0 references

publication date

1 January 1986

1 reference

12 August 2017

Nucleic Acids Research

1 reference

12 August 2017

14

1 reference

12 August 2017

299-315

1 reference

12 August 2017

1

1 reference

Sequence alignments in the neighborhood of the optimum with general application to dynamic programming

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Secondary structure model for 23S ribosomal RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Computer-aided nucleic acid secondary structure modeling incorporating enzymatic digestion data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

An accelerated algorithm for calculating the secondary structure of single stranded RNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Some simple computational methods to improve the folding of large RNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Decay of mRNA in Escherichia coli: investigation of the fate of specific segments of transcripts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Attenuation in amino acid biosynthetic operons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Efficient algorithms for folding and comparing nucleic acid sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Translational initiation in prokaryotes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Fast algorithm for predicting the secondary structure of single-stranded RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Estimation of Secondary Structure in Ribonucleic Acids

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Improved Estimation of Secondary Structure in Ribonucleic Acids

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Sequence requirements for self-splicing of the Tetrahymena thermophila pre-ribosomal RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Method for predicting RNA secondary structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Globin mRNA Sequences: Analysis of Base Pairing and Evolutionary Implications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Computer method for predicting the secondary structure of single-stranded RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=339410

Stability of RNA hairpin loops: A6-Cm-U6

11 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/3003675

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Close relationship between certain nuclear and mitochondrial introns. Implications for the mechanism of RNA splicing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/3003675

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/14.1.299

1 reference

12 August 2017

journals/nar/WilliamsT86

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 August 2017

1 reference

PMCID

339410