EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. (Q36109022)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26280328%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26280328%20AND%20SRC:MED&resulttype=core&format=json

cryogenic electron microscopy

22 February 2020

main subject

0 references

author

Paul D. Adams

6

1 reference

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22 February 2020

Benjamin A Barad

1

1 reference

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22 February 2020

James S Fraser

7

1 reference

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22 February 2020

2

Nathaniel Echols

1 reference

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22 February 2020

author name string

Ray Yu-Ruei Wang

3

1 reference

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22 February 2020

Yifan Cheng

4

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22 February 2020

Frank DiMaio

5

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22 February 2020

publication date

17 August 2015

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22 February 2020

1 reference

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22 February 2020

volume

12

1 reference

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22 February 2020

issue

10

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22 February 2020

page(s)

943-946

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Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement

22 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

A glimpse of structural biology through X-ray crystallography

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Structure of -galactosidase at 3.2-A resolution obtained by cryo-electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Single particle electron cryo-microscopy of a mammalian ion channel

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Structure of the Yeast Mitochondrial Large Ribosomal Subunit

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Atomic model of the F 420 -reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Protein structural ensembles are revealed by redefining X-ray electron density noise

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Structure of the TRPV1 ion channel determined by electron cryo-microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Molecular architecture of a eukaryotic translational initiation complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Cross-validation in cryo-EM-based structural modeling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Cryo-EM model validation using independent map reconstructions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Prevention of overfitting in cryo-EM structure determination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Outcome of the first electron microscopy validation task force meeting

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Rapid model building of alpha-helices in electron-density maps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

PHENIX: a comprehensive Python-based system for macromolecular structure solution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

MolProbity: all-atom structure validation for macromolecular crystallography

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Motif-directed flexible backbone design of functional interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Specific radiation damage to acidic residues and its relation to their chemical and structural environment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Stereochemistry of polypeptide chain configurations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Rotamer libraries in the 21st century

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

The penultimate rotamer library

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Automated nucleic acid chain tracing in real time

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4589481

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3541

inferred from DOI database lookup

7 January 2021

based on heuristic

The penultimate rotamer library

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3541

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.3541

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26280328%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26280328%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

26280328

1 reference