Evaluating a multigene environmental DNA approach for biodiversity assessment (Q36126711)

12 August 2017

Evaluating a multigene environmental DNA approach for biodiversity assessment (English)

1 reference

12 August 2017

0 references

1 reference

1

1 reference

12 August 2017

Duckchul Park

11

0 references

Sandra H Anderson

Sandra H Anderson

15

0 references

Thomas R. Buckley

Thomas R Buckley

3

0 references

Nicola Nelson

Nicola Nelson

17

0 references

Andrew Dopheide

Andrew Dopheide

5

0 references

Richard Newcomb

Richard D Newcomb

2

0 references

Mark Stevens

13

Mark I Stevens

1 reference

12 August 2017

10

Stefanie Grosser

1 reference

12 August 2017

14

James C Russell

1 reference

12 August 2017

Dong Xie

4

1 reference

12 August 2017

Benjamin Cm Potter

6

1 reference

12 August 2017

Joseph Heled

7

1 reference

12 August 2017

Howard A Ross

8

1 reference

12 August 2017

Leah Tooman

9

1 reference

12 August 2017

Nicholas J Demetras

12

1 reference

12 August 2017

Anna Carter

16

1 reference

12 August 2017

6 October 2015

1 reference

12 August 2017

1 reference

12 August 2017

4

1 reference

12 August 2017

46

1 reference

describes a project that uses

12 August 2017

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4595072

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13742-015-0086-1

0 references

cites work

Environmental DNA for wildlife biology and biodiversity monitoring

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

The founding charter of the Genomic Observatories Network

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Distribution and diversity of soil microfauna from East Antarctica: assessing the link between biotic and abiotic factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

UPARSE: highly accurate OTU sequences from microbial amplicon reads

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

DNA from soil mirrors plant taxonomic and growth form diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Integrative analysis of environmental sequences using MEGAN4

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Choosing and using a plant DNA barcode

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Moving pictures of the human microbiome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Bacterial community variation in human body habitats across space and time

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Pyrosequencing enumerates and contrasts soil microbial diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Microbial diversity in the deep sea and the underexplored "rare biosphere"

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Causes and consequences of biological diversity in soil

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

An ecological perspective on bacterial biodiversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Fast, accurate error-correction of amplicon pyrosequences using Acacia.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Tracking earthworm communities from soil DNA.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Sequencing data: A genomic network to monitor Earth

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595072

Temporal variation in airborne microbial populations and microbially-derived allergens in a tropical urban landscape

23 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

The diversity of soil communities, the ?poor man's tropical rainforest?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

The values of soil animals for conservation biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

A Caution Regarding Rules of Thumb for Variance Inflation Factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

DISTANCE-BASED REDUNDANCY ANALYSIS: TESTING MULTISPECIES RESPONSES IN MULTIFACTORIAL ECOLOGICAL EXPERIMENTS

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13742-015-0086-1

10.1186/S13742-015-0086-1

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

1 reference