Tracing determinants of dual substrate specificity in glycoside hydrolase family 5. (Q36127227)

12 August 2017

Tracing determinants of dual substrate specificity in glycoside hydrolase family 5. (English)

1 reference

12 August 2017

8

1 reference

12 August 2017

Michael P Thelen

7

0 references

Blake Alexander Simmons

object named as

Blake A Simmons

12

0 references

Jay Keasling

10

object named as

Jay D Keasling

1 reference

12 August 2017

14

Dylan Chivian

1 reference

12 August 2017

15

Swapnil R Chhabra

1 reference

12 August 2017

2

Gregory D Friedland

1 reference

12 August 2017

4

Sonia A Reveco

1 reference

12 August 2017

13

Kenneth L Sale

1 reference

12 August 2017

9

Adam P Arkin

1 reference

12 August 2017

Zhiwei Chen

1

1 reference

12 August 2017

Jose H Pereira

3

1 reference

12 August 2017

Rosa Chan

5

1 reference

12 August 2017

Joshua I Park

6

1 reference

12 August 2017

Harvey W Blanch

11

1 reference

12 August 2017

language of work or name

English

0 references

publication date

29 May 2012

1 reference

Journal of Biological Chemistry

12 August 2017

1 reference

12 August 2017

287

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12 August 2017

25335-25343

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12 August 2017

30

1 reference

Diverse substrate recognition mechanism revealed by Thermotoga maritima Cel5A structures in complex with cellotetraose, cellobiose and mannotriose

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Enzyme promiscuity: a mechanistic and evolutionary perspective

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

FastTree 2--approximately maximum-likelihood trees for large alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Circular permutation of Bacillus circulans xylanase: a kinetic and structural study

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Protein engineering in designing tailored enzymes and microorganisms for biofuels production

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Understanding how diverse beta-mannanases recognize heterogeneous substrates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Protein structure prediction on the Web: a case study using the Phyre server

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Protein promiscuity and its implications for biotechnology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Intense neutral drifts yield robust and evolvable consensus proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Protein engineers turned evolutionists

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Biomass recalcitrance: engineering plants and enzymes for biofuels production

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Enzyme promiscuity: evolutionary and mechanistic aspects.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Outlook for cellulase improvement: screening and selection strategies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Three-dimensional structure of (1,4)-beta-D-mannan mannanohydrolase from tomato fruit

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

UCSF Chimera--a visualization system for exploratory research and analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

WebLogo: A Sequence Logo Generator

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

MUSCLE: multiple sequence alignment with high accuracy and high throughput

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Enhanced genome annotation using structural profiles in the program 3D-PSSM

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

The three-dimensional structure of a Trichoderma reesei beta-mannanase from glycoside hydrolase family 5

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

High-resolution native and complex structures of thermostable beta-mannanase from Thermomonospora fusca - substrate specificity in glycosyl hydrolase family 5

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Snapshots along an enzymatic reaction coordinate: analysis of a retaining beta-glycoside hydrolase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Nomenclature for sugar-binding subsites in glycosyl hydrolases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

The crystal structure of a family 5 endoglucanase mutant in complexed and uncomplexed forms reveals an induced fit activation mechanism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Crystal structure of the catalytic domain of a bacterial cellulase belonging to family 5

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Enzyme recruitment in evolution of new function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Analyses of the gene and amino acid sequence of the Prevotella (Bacteroides) ruminicola 23 xylanase reveals unexpected homology with endoglucanases from other genera of bacteria.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Nucleotide sequence and characteristics of endoglucanase gene engB from Clostridium cellulovorans

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

The histidine 115-histidine 134 dyad mediates the lactonase activity of mammalian serum paraoxonases

2 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.362640

Determination of reducing sugars with 3-methyl-2-benzothiazolinonehydrazone

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.362640

Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.362640

3DCoffee: combining protein sequences and structures within multiple sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.362640

Directed evolution of a thermophilic endoglucanase (Cel5A) into highly active Cel5A variants with an expanded temperature profile.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.362640

3D-Hit: fast structural comparison of proteins.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3408205

Microplate-based carboxymethylcellulose assay for endoglucanase activity

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22645145

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Substrate specificity of family 5, 6, 7, 9, 12, and 45 endoglucanases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22645145

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M112.362640

1 reference

12 August 2017

1 reference

12 August 2017

1 reference