A note on the false discovery rate of novel peptides in proteogenomics (Q36129323)

12 August 2017

A note on the false discovery rate of novel peptides in proteogenomics (English)

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12 August 2017

Kun Zhang

1

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12 August 2017

Yan Fu

2

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12 August 2017

Wen-Feng Zeng

3

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12 August 2017

Kun He

4

1 reference

12 August 2017

Hao Chi

5

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12 August 2017

Chao Liu

6

1 reference

12 August 2017

Yan-Chang Li

7

1 reference

12 August 2017

Yuan Gao

8

1 reference

12 August 2017

Ping Xu

9

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12 August 2017

Si-Min He

10

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12 August 2017

language of work or name

English

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publication date

14 June 2015

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12 August 2017

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12 August 2017

31

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12 August 2017

20

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12 August 2017

3249-3253

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Creative Commons Attribution-NonCommercial 4.0 International

12 August 2017

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Proteogenomics: concepts, applications and computational strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Proteogenomic characterization of human colon and rectal cancer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

A draft map of the human proteome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Proteogenomic mapping as a complementary method to perform genome annotation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595894

10.1093/BIOINFORMATICS/BTV340

23 September 2018

Identifiers

DOI

1 reference

journals/bioinformatics/ZhangFZHCLLGXH15

12 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 August 2017

1 reference