HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies (Q36130898)

12 August 2017

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies (English)

1 reference

12 August 2017

Shengfeng Huang

1

1 reference

12 August 2017

Zelin Chen

2

1 reference

12 August 2017

Guangrui Huang

3

1 reference

12 August 2017

Ting Yu

4

1 reference

12 August 2017

Ping Yang

5

1 reference

12 August 2017

Jie Li

6

1 reference

12 August 2017

Yonggui Fu

7

1 reference

12 August 2017

Shaochun Yuan

8

1 reference

12 August 2017

Shangwu Chen

9

1 reference

12 August 2017

Anlong Xu

10

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12 August 2017

3 May 2012

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12 August 2017

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12 August 2017

22

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12 August 2017

8

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12 August 2017

1581-1588

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Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Considering transposable element diversification in de novo annotation approaches

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Haplotype-resolved genome sequencing of a Gujarati Indian individual.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Quake: quality-aware detection and correction of sequencing errors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Genome assembly reborn: recent computational challenges

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Sim4cc: a cross-species spliced alignment program

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

ABySS: a parallel assembler for short read sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

The amphioxus genome and the evolution of the chordate karyotype

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

The complete genome of an individual by massively parallel DNA sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

WindowMasker: window-based masker for sequenced genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

The diploid genome sequence of Candida albicans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Human-mouse alignments with BLASTZ

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

A whole-genome assembly of Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

FrameDP: sensitive peptide detection on noisy matured sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

Aggressive assembly of pyrosequencing reads with mates

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3409271

23 September 2018

Identifiers

DOI

10.1101/GR.133652.111

1 reference

12 August 2017

1 reference

12 August 2017

1 reference