Multidimensional protein identification technology: current status and future prospects (Q36168447)

12 August 2017

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title

Multidimensional protein identification technology: current status and future prospects (English)

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12 August 2017

2

Andrew Emili

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12 August 2017

Thomas Kislinger

1

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12 August 2017

1 January 2005

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Expert Review of Proteomics

12 August 2017

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12 August 2017

2

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12 August 2017

27-39

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12 August 2017

1

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Genome sequence of the Brown Norway rat yields insights into mammalian evolution

12 August 2017

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A physical map of the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

The Sequence of the Human Genome

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Initial sequencing and comparative analysis of the mouse genome

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Initial sequencing and analysis of the human genome

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Mass spectrometry-based proteomics

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

From genomics to proteomics

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Proteome analysis of posttranslational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Proteomics: analytical tools and techniques

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Molecular-level description of proteins from saccharomyces cerevisiae using quadrupole FT hybrid mass spectrometry for top down proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Use of a lectin affinity selector in the search for unusual glycosylation in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A proteomics approach to understanding protein ubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A proteomic study of SUMO-2 target proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

The ABC's (and XYZ's) of peptide sequencing

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Electrospray ionization for mass spectrometry of large biomolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Proposal for a common nomenclature for sequence ions in mass spectra of peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Mobile and localized protons: a framework for understanding peptide dissociation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Proteomic survey of metabolic pathways in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A proteomic view of the Plasmodium falciparum life cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

PRISM, a generic large scale proteomic investigation strategy for mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Protein sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Organelle proteomics: looking at less to see more

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Sequit: software for de novo peptide sequencing by matrix-assisted laser desorption/ionization post-source decay mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Peptide and protein de novo sequencing by mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Probability-based validation of protein identifications using a modified SEQUEST algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Direct analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Nuclear membrane proteins with potential disease links found by subtractive proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Phosphoproteomic analysis of the developing mouse brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Large-scale characterization of HeLa cell nuclear phosphoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A method for the comprehensive proteomic analysis of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Advances in quantitative proteomics via stable isotope tagging and mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Advances in quantitative proteomics using stable isotope tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Analysis of quantitative proteomic data generated via multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

18O labeling: a tool for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Shotgun identification of protein modifications from protein complexes and lens tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Directed proteomic analysis of the human nucleolus

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Characterization of the human heart mitochondrial proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Identification of biochemical adaptations in hyper- or hypocontractile hearts from phospholamban mutant mice by expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Global analysis of protein expression in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Rapid protein identification using a microscale electrospray LC/MS system on an ion trap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

ExPASy: The proteomics server for in-depth protein knowledge and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

GoMiner: a resource for biological interpretation of genomic and proteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Microarray data normalization and transformation

21 January 2018

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https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Computational analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

A Proteome-wide Approach Identifies Sumoylated Substrate Proteins in Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

Development of a Multiplexed Microcapillary Liquid Chromatography System for High-Throughput Proteome Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14789450.2.1.27

21 January 2018

Identifiers

DOI

10.1586/14789450.2.1.27

1 reference

12 August 2017

1 reference

PubMed ID

15966850