Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition (Q36172268)

12 August 2017

Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition (English)

1 reference

12 August 2017

4

Gisela Storz

1 reference

12 August 2017

3

Susan Gottesman

1 reference

12 August 2017

1

Daniel J Schu

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12 August 2017

2

Aixia Zhang

1 reference

12 August 2017

language of work or name

English

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publication date

15 September 2015

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12 August 2017

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12 August 2017

34

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20

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12 August 2017

2557-2573

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describes a project that uses

12 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4609186/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation

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Recognition of the small regulatory RNA RydC by the bacterial Hfq protein

1 October 2017

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Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli

1 October 2017

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Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching

1 October 2017

1 reference

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Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq.

1 October 2017

1 reference

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Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

1 October 2017

1 reference

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Bacterial sRNAs: regulation in stress.

1 October 2017

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Complex transcriptional and post-transcriptional regulation of an enzyme for lipopolysaccharide modification

1 October 2017

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Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA

1 October 2017

1 reference

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Structure and RNA-binding properties of the bacterial LSm protein Hfq.

1 October 2017

1 reference

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Lsm proteins and Hfq: Life at the 3' end

1 October 2017

1 reference

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Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets

1 October 2017

1 reference

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Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.

1 October 2017

1 reference

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Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition

1 October 2017

1 reference

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The bacterial protein Hfq: much more than a mere RNA-binding factor

1 October 2017

1 reference

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Multiple factors dictate target selection by Hfq-binding small RNAs

1 October 2017

1 reference

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A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli.

1 October 2017

1 reference

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Competition among Hfq-binding small RNAs in Escherichia coli

1 October 2017

1 reference

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PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Hfq and its constellation of RNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Structural basis for RNA 3'-end recognition by Hfq

1 October 2017

1 reference

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Role of polynucleotide phosphorylase in sRNA function in Escherichia coli

1 October 2017

1 reference

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Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

1 October 2017

1 reference

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Bacterial small RNA regulators: versatile roles and rapidly evolving variations

1 October 2017

1 reference

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Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Positive regulation by small RNAs and the role of Hfq

1 October 2017

1 reference

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Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

RNAstructure: software for RNA secondary structure prediction and analysis

1 October 2017

1 reference

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Modulating the bacterial surface with small RNAs: a new twist on PhoP/Q-mediated lipopolysaccharide modification

1 October 2017

1 reference

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Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

1 October 2017

1 reference

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A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides

1 October 2017

1 reference

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Switching off small RNA regulation with trap-mRNA

1 October 2017

1 reference

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Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

1 October 2017

1 reference

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A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system

1 October 2017

1 reference

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A conserved small RNA promotes silencing of the outer membrane protein YbfM

1 October 2017

1 reference

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Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region

1 October 2017

1 reference

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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Hfq structure, function and ligand binding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Effect of RyhB small RNA on global iron use in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Global analysis of small RNA and mRNA targets of Hfq

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

An efficient recombination system for chromosome engineering in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Interaction of Escherichia coli host factor protein with oligoriboadenylates

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Structure of bacterial regulatory RNAs determines their performance in competition for the chaperone protein Hfq.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

The influence of Escherichia coli Hfq mutations on RNA binding and sRNA•mRNA duplex formation in rpoS riboregulation.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4609186

Factor Fraction required for the Synthesis of Bacteriophage Qβ-RNA

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26373314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.15252/EMBJ.201591569

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

26373314

1 reference