Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis. (Q36180286)

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English	Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.	scientific article

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2 February 2020

Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis (English)

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2 February 2020

Shewanella oneidensis

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Shewanella oneidensis

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Claudio Altafini

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2 February 2020

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Qasim K Beg

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2 February 2020

Mattia Zampieri

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Niels Klitgord

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2 February 2020

Sara B Collins

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2 February 2020

Margrethe H Serres

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2 February 2020

Daniel Segrè

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25 May 2012

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Nucleic Acids Research

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7132-7149

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4 October 2016

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ArcS, the cognate sensor kinase in an atypical Arc system of Shewanella oneidensis MR-1.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

1 October 2017

Multiple factors underlying the maximum motility of Escherichia coli as cultures enter post-exponential growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

1 October 2017

Sequence and genetic characterization of etrA, an fnr analog that regulates anaerobic respiration in Shewanella putrefaciens MR-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

1 October 2017

Regulation of bacterial glycogen synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

1 October 2017

Growth rate-dependent global effects on gene expression in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

2 July 2018

Identity of the growth-limiting nutrient strongly affects storage carbohydrate accumulation in anaerobic chemostat cultures of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

2 July 2018

Dual role of LldR in regulation of the lldPRD operon, involved in L-lactate metabolism in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

2 July 2018

The glgX gene product of Corynebacterium glutamicum is required for glycogen degradation and for fast adaptation to hyperosmotic stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

2 July 2018

Hydrogen metabolism in Shewanella oneidensis MR-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

2 July 2018

A system-level approach for deciphering the transcriptional response to prion infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Spatiotemporal activity of the mshA gene system in Shewanella oneidensis MR-1 biofilms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

A global view of Escherichia coli Rsd protein and its interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Identification of a hydroxyproline transport system in the legume endosymbiont Sinorhizobium meliloti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Control of RpoS in global gene expression of Escherichia coli in minimal media.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Comparison of uranium(VI) removal by Shewanella oneidensis MR-1 in flow and batch reactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Inference of gene networks from temporal gene expression profiles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

A kinetic model describing Shewanella oneidensis MR-1 growth, substrate consumption, and product secretion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Molecular dynamics of the Shewanella oneidensis response to chromate stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Anaerobic regulation by an atypical Arc system in Shewanella oneidensis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Modulation of glycogen and trehalose levels in Micromonospora echinospora (ATCC 15837).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Free RNA polymerase and modeling global transcription in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Anaerobic activation of arcA transcription in Escherichia coli: roles of Fnr and ArcA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

A novel bacterial transcription cycle involving sigma 54.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

Regulation of bacterial glycogen synthesis. Stimulation of glycogen synthesis by endogenous and exogenous cyclic adenosine 3':5'-monophosphate in Escherichia coli and the requirement for a functional CRP gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424579

23 September 2018

A direct approach to false discovery rates

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS467

21 January 2018

Physiological effects of nitrogen starvation in an anaerobic batch culture of Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22638572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge

1 reference

https://pubmed.ncbi.nlm.nih.gov/22638572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AeratedShewanella oneidensisin continuously fed bioelectrochemical systems for power and hydrogen production

1 reference

https://pubmed.ncbi.nlm.nih.gov/22638572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Shewanella oneidensis in a lactate-fed pure-culture and a glucose-fed co-culture with Lactococcus lactis with an electrode as electron acceptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/22638572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster

1 reference

https://pubmed.ncbi.nlm.nih.gov/22638572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKS467

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22638572%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22638572%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22638572%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

ResearchGate publication ID

0 references

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