Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants (Q36217271)

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English	Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants	scientific article

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scholarly article

1 reference

Europe PubMed Central

12 August 2017

Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants (English)

1 reference

Europe PubMed Central

12 August 2017

Helicobacter pylori

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Helicobacter pylori infectious disease

1 reference

based on heuristic

inferred from title

object named as

Ines Thiele

1

0 references

Bernhard Palsson

4

object named as

Bernhard Ø Palsson

1 reference

Europe PubMed Central

12 August 2017

author name string

Thuy D Vo

2

1 reference

Europe PubMed Central

12 August 2017

Nathan D Price

3

1 reference

Europe PubMed Central

12 August 2017

language of work or name

0 references

publication date

1 August 2005

1 reference

Europe PubMed Central

12 August 2017

Journal of Bacteriology

1 reference

Europe PubMed Central

12 August 2017

187

1 reference

Europe PubMed Central

12 August 2017

16

1 reference

Europe PubMed Central

12 August 2017

5818-5830

1 reference

Europe PubMed Central

12 August 2017

Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Advances in flux balance analysis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The Entner-Doudoroff Pathway Has Little Effect on Helicobacter pylori Colonization of Mice

1 reference

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1 October 2017

A revised annotation and comparative analysis of Helicobacter pylori genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Genome-scale metabolic model of Helicobacter pylori 26695.

1 reference

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1 October 2017

Essential role of ferritin Pfr in Helicobacter pylori iron metabolism and gastric colonization

1 reference

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1 October 2017

Identification of nonessential Helicobacter pylori genes using random mutagenesis and loop amplification

1 reference

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1 October 2017

Superoxide dismutase-deficient mutants of Helicobacter pylori are hypersensitive to oxidative stress and defective in host colonization

1 reference

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1 October 2017

Prolonged survival and cytoplasmic pH homeostasis of Helicobacter pylori at pH 1.

1 reference

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1 October 2017

Systematic identification of selective essential genes in Helicobacter pylori by genome prioritization and allelic replacement mutagenesis

1 reference

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1 October 2017

KEGG: kyoto encyclopedia of genes and genomes

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1 October 2017

Helicobacter pylori rocF is required for arginase activity and acid protection in vitro but is not essential for colonization of mice or for urease activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Metabolism and genetics of Helicobacter pylori: the genome era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Essential role of Helicobacter pylori gamma-glutamyltranspeptidase for the colonization of the gastric mucosa of mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The tricarboxylic acid cycle of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The Helicobacter pylori UreI protein is not involved in urease activity but is essential for bacterial survival in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The effect of galE gene inactivation on lipopolysaccharide profile of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Helicobacter pylori glutamine synthetase lacks features associated with transcriptional and posttranslational regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Helicobacter pylori ribBA-mediated riboflavin production is involved in iron acquisition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Helicobacter pylori porCDAB and oorDABC genes encode distinct pyruvate:flavodoxin and 2-oxoglutarate:acceptor oxidoreductases which mediate electron transport to NADP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Characterization of Helicobacter pylori dapE and construction of a conditionally lethal dapE mutant.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

A database for post-genome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The complete genome sequence of the gastric pathogen Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

The Helicobacter pylori ureC gene codes for a phosphoglucosamine mutase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Nutritional requirements for growth of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Unique cholesteryl glucosides in Helicobacter pylori: composition and structural analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

1 October 2017

Purification and properties of 7, 8-diaminopelargonic acid aminotransferase

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1 October 2017

How Helicobacter pylori works: an overview of the metabolism of Helicobacter pylori

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

29 June 2018

Parametric sensitivity of stoichiometric flux balance models applied to wild-type Escherichia coli metabolism.

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22 September 2018

Resistance to hydrogen peroxide in Helicobacter pylori: role of catalase (KatA) and Fur, and functional analysis of a novel gene product designated 'KatA-associated protein', KapA (HP0874).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

22 September 2018

Expression and localization of alpha- and beta-carbonic anhydrase in Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

22 September 2018

Structural and functional analysis of the riboflavin synthesis genes encoding GTP cyclohydrolase II (ribA), DHBP synthase (ribBA), riboflavin synthase (ribC), and riboflavin deaminase/reductase (ribD) from Helicobacter pylori strain P1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

22 September 2018

The Helicobacter pylori pyrB gene encoding aspartate carbamoyltransferase is essential for bacterial survival

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

22 September 2018

Cloning and functional characterization of Helicobacter pylori fumarate reductase operon comprising three structural genes coding for subunits C, A and B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1196094

22 September 2018

Helicobacter pylori-selective antibacterials based on inhibition of pyrimidine biosynthesis

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The physiology and metabolism of the human gastric pathogen Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pyruvate metabolism in Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterisation of glucose transport in Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glucose utilization and lactate production by Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Entner-Doudoroff pathway in Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Aminoacid utilization by Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characteristics of Helicobacter pylori growth in a defined medium and determination of its amino acid requirements

1 reference

https://pubmed.ncbi.nlm.nih.gov/16077130

12 December 2020

based on heuristic

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10.1128/JB.187.16.5818-5830.2005

1 reference

Europe PubMed Central

12 August 2017

release_edmynan4gracvfgwusxn4znluy

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https://api.fatcat.wiki/v0/release/edmynan4gracvfgwusxn4znluy

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

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