Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures (Q36228464)

12 August 2017

Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures (English)

1 reference

12 August 2017

5

Sarah A Woodson

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Eda Koculi

object named as

Eda Koculi

series ordinal

1

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Ravi A. Desai

object named as

Ravi Desai

series ordinal

3

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Dave Thirumalai

series ordinal

4

object named as

D Thirumalai

1 reference

12 August 2017

Samuel S Cho

2

1 reference

PMC publication ID

3439887

12 August 2017

language of work or name

English

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publication date

28 May 2012

1 reference

12 August 2017

Nucleic Acids Research

1 reference

12 August 2017

40

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12 August 2017

16

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12 August 2017

8011-8020

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Creative Commons Attribution-NonCommercial 3.0 Unported

12 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Kinetic barriers and the role of topology in protein and RNA folding

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Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

1 October 2017

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Structural specificity conferred by a group I RNA peripheral element

1 October 2017

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Metal ions and RNA folding: a highly charged topic with a dynamic future

1 October 2017

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RNA and protein folding: common themes and variations

1 October 2017

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Mechanical unfolding of RNA hairpins

1 October 2017

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Single-molecule transition-state analysis of RNA folding

1 October 2017

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Exploring the folding landscape of a structured RNA

1 October 2017

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Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme

1 October 2017

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Geometric nomenclature and classification of RNA base pairs

1 October 2017

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Early events in RNA folding

1 October 2017

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Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

1 October 2017

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Formation of a GNRA tetraloop in P5abc can disrupt an interdomain interaction in the Tetrahymena group I ribozyme

1 October 2017

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Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

1 October 2017

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Quantifying the energetic interplay of RNA tertiary and secondary structure interactions

1 October 2017

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1 October 2017

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Exposing the kinetic traps in RNA folding

1 October 2017

1 reference

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Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

1 October 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 October 2017

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RNA folding causes secondary structure rearrangement

1 October 2017

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Native secondary structure formation in RNA may be a slave to tertiary folding

1 October 2017

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Solution structure of a GAAA tetraloop receptor RNA

1 October 2017

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Crystal structure of a group I ribozyme domain: principles of RNA packing

1 October 2017

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Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

1 October 2017

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GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain

1 October 2017

1 reference

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Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid

1 October 2017

1 reference

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Improved free-energy parameters for predictions of RNA duplex stability

1 October 2017

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Metastability of the folded states of globular proteins

1 October 2017

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Reconstitution of a group I intron self-splicing reaction with an activator RNA.

1 October 2017

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The Stability of Globular Protein

1 October 2017

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Determining the Mg2+ stoichiometry for folding an RNA metal ion core

1 October 2017

1 reference

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Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot.

29 June 2018

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Tertiary interactions determine the accuracy of RNA folding

29 June 2018

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Parameters for the Description of Transition States

22 September 2018

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Perturbed folding kinetics of circularly permuted RNAs with altered topology.

22 September 2018

1 reference

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Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439887

Reversible unfolding of single RNA molecules by mechanical force

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439887

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS468

Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain†

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS468

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS468

Assembly of an exceptionally stable RNA tertiary interface in a group I ribozyme

21 January 2018

1 reference

12 December 2020

The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA

1 reference

12 December 2020

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

12 December 2020

Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding

1 reference

12 December 2020

A magnesium ion core at the heart of a ribozyme domain

1 reference

12 December 2020

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKS468

1 reference

12 August 2017

1 reference

PMC publication ID

3439887

12 August 2017

PubMed publication ID

22641849

1 reference

PMC publication ID

3439887