Life at the extreme: lessons from the genome (Q36228712)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

review article

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title

Life at the extreme: lessons from the genome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

main subject

biological adaptation

1 reference

13 September 2019

1 reference

22 October 2019

1

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25 January 2020

Maheshi Dassanayake

series ordinal

2

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25 January 2020

author name string

Hans J Bohnert

series ordinal

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

John M Cheeseman

series ordinal

4

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25 January 2020

language of work or name

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1 January 2012

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25 January 2020

4 references

20 June 2019

13 September 2019

22 October 2019

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25 January 2020

volume

13

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25 January 2020

issue

3

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25 January 2020

page(s)

241

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

The evolutionary origin of orphan genes

25 January 2020

cites work

1 reference

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The genome of the extremophile crucifer Thellungiella parvula

1 October 2017

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Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

1 October 2017

1 reference

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A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana

1 October 2017

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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

1 October 2017

1 reference

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Ancestral polyploidy in seed plants and angiosperms

1 October 2017

1 reference

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Epigenetic contribution to stress adaptation in plants

1 October 2017

1 reference

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Genome instability and epigenetic modification--heritable responses to environmental stress?

1 October 2017

1 reference

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Genome-scale transcriptome analysis of the desert poplar, Populus euphratica.

1 October 2017

1 reference

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Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana.

1 October 2017

1 reference

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Evolution and functional diversification of MIRNA genes

1 October 2017

1 reference

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Sodium transport in plants: a critical review

1 October 2017

1 reference

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Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Molecular basis of the core regulatory network in ABA responses: sensing, signaling and transport

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Intracellular consequences of SOS1 deficiency during salt stress

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

More than just orphans: are taxonomically-restricted genes important in evolution?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Shedding light on an extremophile lifestyle through transcriptomics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Learning from evolution: Thellungiella generates new knowledge on essential and critical components of abiotic stress tolerance in plants

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Transcript profiling of the salt-tolerant Festuca rubra ssp. litoralis reveals a regulatory network controlling salt acclimatization

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Differential transcript regulation in Arabidopsis thaliana and the halotolerant Lobularia maritima indicates genes with potential function in plant salt adaptation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

An Arabidopsis gene network based on the graphical Gaussian model.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Expressed sequence tags from the halophyte Limonium sinense

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

AtNHX8, a member of the monovalent cation: proton antiporter-1 family in Arabidopsis thaliana, encodes a putative Li/H antiporter

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Generation and analysis of expressed sequence tags from the salt-tolerant mangrove species Avicennia marina (Forsk) Vierh.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Transcript profiling of salinity stress responses by large-scale expressed sequence tag analysis in Mesembryanthemum crystallinum

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Common components, networks, and pathways of cross-tolerance to stress. The central role of "redox" and abscisic acid-mediated controls

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

From genome to function: the Arabidopsis aquaporins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Learning from the Arabidopsis experience. The next gene search paradigm

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Stress-induced DNA methylation changes and their heritability in asexual dandelions.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Dissecting salt stress pathways

29 June 2018

1 reference

A novel salt-tolerant L-myo-inositol-1-phosphate synthase from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice: molecular cloning, bacterial overexpression, characterization, and functional introgression into tobacco-conferring salt tol

21 January 2018

1 reference

Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

21 January 2018

1 reference

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

21 January 2018

1 reference

AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta.

21 January 2018

1 reference

Loss of halophytism by interference with SOS1 expression.

21 January 2018

1 reference

High rate of chimeric gene origination by retroposition in plant genomes

21 January 2018

1 reference

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

21 January 2018

1 reference

Identification of salt-induced genes from Salicornia brachiata, an extreme halophyte through expressed sequence tags analysis

21 January 2018

1 reference

Comparative transcriptomics for mangrove species: an expanding resource

21 January 2018

1 reference

Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia

21 January 2018

1 reference

TsHKT1;2, a HKT1 homolog from the extremophile Arabidopsis relative Thellungiella salsuginea, shows K(+) specificity in the presence of NaCl

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Abiotic stress and plant genome evolution. Search for new models

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439964

Transcription strength and halophytic lifestyle

21 October 2018

1 reference

12 December 2020

Effect of hypermethylation of CCWGG sequences in DNA of Mesembryanthemum crystallinum plants on their adaptation to salt stress

1 reference

12 December 2020

Cloning of an H+-PPase gene from Thellungiella halophila and its heterologous expression to improve tobacco salt tolerance

1 reference

12 December 2020

Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.).

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB4003

1 reference

12 August 2017

10.1186/GB-2012-13-3-241

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

25 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22390828%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

PubMed publication ID

22390828

1 reference