DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter (Q36228906)

12 August 2017

title

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter (English)

1 reference

12 August 2017

Bryan Quach

1

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Terrence S. Furey

object named as

Terrence S Furey

series ordinal

2

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language of work or name

English

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publication date

19 December 2016

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12 August 2017

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12 August 2017

volume

33

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12 August 2017

issue

7

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12 August 2017

page(s)

956-963

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Analysis of computational footprinting methods for DNase sequencing experiments

12 August 2017

cites work

1 reference

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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.

22 September 2018

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BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data

22 September 2018

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DNase footprint signatures are dictated by factor dynamics and DNA sequence

22 September 2018

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22 September 2018

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Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

22 September 2018

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Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

22 September 2018

1 reference

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22 September 2018

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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

22 September 2018

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22 September 2018

1 reference

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Using DNase digestion data to accurately identify transcription factor binding sites

22 September 2018

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22 September 2018

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An expansive human regulatory lexicon encoded in transcription factor footprints

22 September 2018

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22 September 2018

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Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

22 September 2018

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22 September 2018

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22 September 2018

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22 September 2018

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High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

22 September 2018

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A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data

22 September 2018

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

22 September 2018

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22 September 2018

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22 September 2018

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High-resolution mapping and characterization of open chromatin across the genome

22 September 2018

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Genome-wide mapping of in vivo protein-DNA interactions

22 September 2018

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22 September 2018

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22 September 2018

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A training algorithm for optimal margin classifiers

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW740

Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW740

10.1093/BIOINFORMATICS/BTW740

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/QuachF17

12 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

6075477

0 references

1 reference