Preventing transcriptional gene silencing by active DNA demethylation (Q36257297)

13 August 2017

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title

Preventing transcriptional gene silencing by active DNA demethylation (English)

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13 August 2017

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3

Jian-Kang Zhu

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13 August 2017

Avnish Kapoor

1

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PubMed ID

16162337

13 August 2017

Fernanda Agius

series ordinal

2

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PubMed ID

16162337

13 August 2017

language of work or name

English

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publication date

31 August 2005

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13 August 2017

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13 August 2017

579

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13 August 2017

26

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13 August 2017

5889-5898

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Epigenetic developmental mechanisms in plants: molecules and targets of plant epigenetic regulation

13 August 2017

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methylation and epigenetic inheritance in plants and filamentous fungi

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Common themes in mechanisms of gene silencing

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Transcriptional gene silencing in plants: targets, inducers and regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Arabidopsis epigenetics: when RNA meets chromatin.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

21 January 2018

RNA silencing in plants

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Chromatin-based silencing mechanisms

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methylation and epigenetics

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

RNAi-mediated pathways in the nucleus

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Role for a bidentate ribonuclease in the initiation step of RNA interference

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Ancient pathways programmed by small RNAs

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Perspective: machines for RNAi

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Genomic imprinting: parental influence on the genome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Epigenetics: imprinting in plants and mammals--the same but different?

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Epigenetic regulation of mammalian genomic imprinting

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

X-chromosome inactivation: closing in on proteins that bind Xist RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Gene activation and gene silencing.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Chromatin conversations: mechanisms and implications of paramutation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

RNA-mediated RNA degradation in transgene- and virus-induced gene silencing

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Methylation-induced repression--belts, braces, and chromatin

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Role of transposable elements in heterochromatin and epigenetic control

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The value-added genome: building and maintaining genomic cytosine methylation landscapes

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A SNF2-like protein facilitates dynamic control of DNA methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Caught in conspiracy: cooperation between DNA methylation and histone H3K9 methylation in the establishment and maintenance of heterochromatin

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Two regulatory levels of transcriptional gene silencing in Arabidopsis.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Transcriptional silencing and promoter methylation triggered by double-stranded RNA

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The role of RNA interference in heterochromatic silencing

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Regulation of heterochromatin by histone methylation and small RNAs

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The role of the RNAi machinery in heterochromatin formation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Induction of DNA methylation and gene silencing by short interfering RNAs in human cells

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Small interfering RNA-induced transcriptional gene silencing in human cells

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Double-stranded siRNA targeted to the huntingtin gene does not induce DNA methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methylation patterns and epigenetic memory

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The role of DNA methylation in mammalian epigenetics

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA demethylating agents and chromatin-remodelling drugs: which, how and why?

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Gardening the genome: DNA methylation in Arabidopsis thaliana

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Plant DNA methyltransferases.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A gene essential for de novo methylation and development in Ascobolus reveals a novel type of eukaryotic DNA methyltransferase structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Targeted mutation of the DNA methyltransferase gene results in embryonic lethality

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Demethylation-induced developmental pleiotropy in Arabidopsis

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNMT1 forms a complex with Rb, E2F1 and HDAC1 and represses transcription from E2F-responsive promoters

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methyltransferase Dnmt1 associates with histone deacetylase activity

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA and histone methylation in plants

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA methylation is a reversible biological signal

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Histone demethylation mediated by the nuclear amine oxidase homolog LSD1

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Local DNA demethylation in vertebrates: how could it be performed and targeted?

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA demethylation is necessary for the epigenetic reprogramming of somatic cell nuclei

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A mammalian protein with specific demethylase activity for mCpG DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DNA demethylation in vitro: involvement of RNA.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The role of DNA demethylation during development

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Analysis of putative RNase sensitivity and protease insensitivity of demethylation activity in extracts from rat myoblasts

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

5-methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosylase associated with the chicken embryo DNA demethylation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 demethylates the promoter of a hormone-regulated reporter gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A chicken embryo protein related to the mammalian DEAD box protein p68 is tightly associated with the highly purified protein-RNA complex of 5-MeC-DNA glycosylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Enzymic removal of 5-methylcytosine from DNA by a human DNA-glycosylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Quality control by DNA repair

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Initiation of base excision repair: glycosylase mechanisms and structures

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

AP endonuclease-independent DNA base excision repair in human cells

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Evidence that MutY is a monofunctional glycosylase capable of forming a covalent Schiff base intermediate with substrate DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Recent progress in the biology, chemistry and structural biology of DNA glycosylases

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Cloning of a 3-methyladenine-DNA glycosylase from Arabidopsis thaliana

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

cDNA cloning, expression and functional characterization of an Arabidopsis thaliana homologue of the Escherichia coli DNA repair enzyme endonuclease III.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

A functional OGG1 homologue from Arabidopsis thaliana

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Developmental abnormalities and epimutations associated with DNA hypomethylation mutations

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Asf1 links Rad53 to control of chromatin assembly

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

The RCAF complex mediates chromatin assembly during DNA replication and repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Aberrant DNA methylation as a cancer-inducing mechanism

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

Demethylation of the zygotic paternal genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.08.039

10.1016/J.FEBSLET.2005.08.039

21 January 2018

Identifiers

DOI

1 reference

13 August 2017

1 reference

PubMed ID

16162337