Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. (Q36287609)

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12 February 2020

title

Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics (English)

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12 February 2020

author

Sandra Clauder-Münster

3

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12 February 2020

Lars M Steinmetz

4

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12 February 2020

author name string

TaeSoo Kim

1

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12 February 2020

Zhenyu Xu

2

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12 February 2020

Stephen Buratowski

5

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12 February 2020

language of work or name

English

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publication date

6 September 2012

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12 February 2020

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12 February 2020

volume

150

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12 February 2020

issue

6

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12 February 2020

page(s)

1158-1169

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Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast

12 February 2020

cites work

1 reference

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Expression noise and acetylation profiles distinguish HDAC functions

30 September 2017

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Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment

30 September 2017

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Intragenic enhancers act as alternative promoters

30 September 2017

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30 September 2017

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Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species

30 September 2017

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Genetic analysis implicates the Set3/Hos2 histone deacetylase in the deposition and remodeling of nucleosomes containing H2A.Z.

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Alternative promoter usage at the Notch1 locus supports ligand-independent signaling in T cell development and leukemogenesis.

30 September 2017

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30 September 2017

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Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes

30 September 2017

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The Rpd3L HDAC complex is essential for the heat stress response in yeast.

30 September 2017

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Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

30 September 2017

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Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions

30 September 2017

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ING4 Mediates Crosstalk between Histone H3 K4 Trimethylation and H3 Acetylation to Attenuate Cellular Transformation

30 September 2017

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Bidirectional promoters generate pervasive transcription in yeast

30 September 2017

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Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast

30 September 2017

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Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

30 September 2017

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Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation

30 September 2017

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Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4

30 September 2017

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The role of chromatin during transcription

30 September 2017

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Chromatin modifications and their function

30 September 2017

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

30 September 2017

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30 September 2017

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Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs

30 September 2017

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Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.

30 September 2017

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ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression

30 September 2017

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30 September 2017

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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

30 September 2017

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

30 September 2017

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Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains

30 September 2017

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30 September 2017

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30 September 2017

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A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation

30 September 2017

1 reference

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

30 September 2017

1 reference

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Global analysis of protein expression in yeast

30 September 2017

1 reference

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Transcription elongation factors repress transcription initiation from cryptic sites.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055

Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461055

The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program

30 September 2017

1 reference

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H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

30 September 2017

1 reference

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The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress

30 September 2017

1 reference

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Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription

29 June 2018

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Antisense transcription controls cell fate in Saccharomyces cerevisiae

29 June 2018

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XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

29 June 2018

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A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

22 September 2018

1 reference

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Requirement of Hos2 histone deacetylase for gene activity in yeast

22 September 2018

1 reference

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In vivo site-directed mutagenesis using oligonucleotides

22 September 2018

1 reference

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Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin

22 September 2018

1 reference

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10.1016/J.CELL.2012.08.016

5 December 2018

Identifiers

DOI

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12 February 2020

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12 February 2020

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