R3D Align: global pairwise alignment of RNA 3D structures using local superpositions (Q36300117)

13 August 2017

R3D Align: global pairwise alignment of RNA 3D structures using local superpositions (English)

1 reference

13 August 2017

Ryan R. Rahrig

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

29 July 2024

Neocles B. Leontis

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

29 July 2024

Craig L. Zirbel

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

29 July 2024

language of work or name

English

0 references

publication date

6 October 2010

1 reference

PMC publication ID

3465099

full work available at URL

13 August 2017

https://academic.oup.com/bioinformatics/article-pdf/26/21/2689/48853173/bioinformatics_26_21_2689.pdf

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/21/2689

29 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20929913/?tool=EBI

29 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20929913/pdf/?tool=EBI

29 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://europepmc.org/articles/PMC3465099

29 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://europepmc.org/articles/PMC3465099?pdf=render

29 July 2024

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://doi.org/10.1093/bioinformatics/btq506

29 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20929913

https://academic.oup.com/bioinformatics/article-pdf/26/21/2689/48853173/bioinformatics_26_21_2689.pdf

29 July 2024

1 reference

10.1093/BIOINFORMATICS/BTQ506

Crossref

DOI

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTQ506

29 July 2024

1 reference

13 August 2017

26

1 reference

13 August 2017

21

1 reference

13 August 2017

2689-2697

1 reference

Classification and energetics of the base-phosphate interactions in RNA

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Frequency and isostericity of RNA base pairs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

SARSA: a web tool for structural alignment of RNA using a structural alphabet

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Structure of the 70S ribosome complexed with mRNA and tRNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Structures of the bacterial ribosome at 3.5 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Tools for the automatic identification and classification of RNA base pairs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Crystal structure of the specificity domain of ribonuclease P

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

30 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

Structure of the 30S ribosomal subunit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

A general method applicable to the search for similarities in the amino acid sequence of two proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

New metrics for comparing and assessing discrepancies between RNA 3D structures and models

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

The RNA structure alignment ontology

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

RNA structure alignment by a unit-vector approach

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465099

ARTS: alignment of RNA tertiary structures

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20929913

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Basis for structural diversity in homologous RNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20929913

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Configurational Statistics of Polynucleotide Chains. A Single Virtual Bond Treatment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20929913

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTQ506

1 reference

journals/bioinformatics/RahrigLZ10

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3465099

13 August 2017

1 reference

PMC publication ID

3465099