Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae (Q36316768)

13 August 2017

Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae. (English)

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13 August 2017

1 reference

Jaehyuk Choi

1

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13 August 2017

Jongsun Park

2

1 reference

13 August 2017

Junhyun Jeon

3

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13 August 2017

Myoung-Hwan Chi

4

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13 August 2017

Jaeduk Goh

5

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13 August 2017

Sung-Yong Yoo

6

1 reference

13 August 2017

Jaejin Park

7

1 reference

13 August 2017

Kyongyong Jung

8

1 reference

13 August 2017

Hyojeong Kim

9

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13 August 2017

Sook-Young Park

10

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13 August 2017

Hee-Sool Rho

11

1 reference

13 August 2017

Soonok Kim

12

1 reference

13 August 2017

Byeong Ryun Kim

13

1 reference

13 August 2017

Seong-Sook Han

14

1 reference

13 August 2017

Seogchan Kang

15

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13 August 2017

Yong-Hwan Lee

16

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13 August 2017

language of work or name

English

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publication date

10 September 2007

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13 August 2017

Molecular Microbiology

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13 August 2017

66

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13 August 2017

2

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13 August 2017

371-382

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Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

A case of promiscuity: Agrobacterium's endless hunt for new partners.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

MHP1, a Magnaporthe grisea hydrophobin gene, is required for fungal development and plant colonization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Agrobacterium-mediated transformation as a tool for functional genomics in fungi.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

The genome sequence of the rice blast fungus Magnaporthe grisea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

The evolutionary dynamics of eukaryotic gene order

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Cryptococcus neoformans virulence gene discovery through insertional mutagenesis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Agrobacterium-mediated insertional mutagenesis (AIM) of the entomopathogenic fungus Beauveria bassiana

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

On the Trail of a Cereal Killer: Exploring the Biology ofMagnaporthe grisea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Genome-wide insertional mutagenesis of Arabidopsis thaliana

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

DNA helix: the importance of being GC-rich

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

ATIDB: Arabidopsis thaliana insertion database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

A high-throughput Arabidopsis reverse genetics system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Functional profiling of the Saccharomyces cerevisiae genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Gene discovery and gene function assignment in filamentous fungi

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Genetic transformation of HeLa cells by Agrobacterium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

EMBOSS: the European Molecular Biology Open Software Suite

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Trinucleotide models for DNA bending propensity: comparison of models based on DNaseI digestion and nucleosome packaging data.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

T-DNA integration: a mode of illegitimate recombination in plants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

T-DNA insertion mutagenesis in Arabidopsis: going back and forth

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Transposon impala, a novel tool for gene tagging in the rice blast fungus Magnaporthe grisea.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Agrobacterium tumefaciens-mediated transformation of filamentous fungi

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Analysis of the chromosomal distribution of transposon-carrying T-DNAs in tomato using the inverse polymerase chain reaction.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Sequence periodicities in chicken nucleosome core DNA.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Generation and analysis of end sequence database for T-DNA tagging lines in rice.

29 June 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

A critical assessment of Agrobacterium tumefaciens-mediated transformation as a tool for pathogenicity gene discovery in the phytopathogenic fungus Leptosphaeria maculans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Insertional mutagenesis in yeasts using T-DNA from Agrobacterium tumefaciens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Distribution and characterization of over 1000 T-DNA tags in rice genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Genome-wide functional analysis of pathogenicity genes in the rice blast fungus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

T-DNA insertional mutagenesis for functional genomics in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Transgene structures in T-DNA-inserted rice plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Agrobacterium-Mediated Transformation of Fusarium oxysporum: An Efficient Tool for Insertional Mutagenesis and Gene Transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Site preferences of insertional mutagenesis agents in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Increased transformation frequency and tagging of developmental genes in Aspergillus nidulans by restriction enzyme-mediated integration (REMI).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Magnaporthe grisea pathogenicity genes obtained through insertional mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

Agrobacterium tumefaciens-mediated transformation of the plant pathogenic fungus, Magnaporthe grisea

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2169514

Novel gene functions required for melanization of the human pathogenCryptococcus neoformans

22 September 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2007.05918.X

The distribution of T-DNA in the genomes of transgenic Arabidopsis and rice

21 January 2018

1 reference

12 December 2020

High-Throughput TAIL-PCR as a Tool to Identify DNA Flanking Insertions

1 reference

12 December 2020

Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions

1 reference

12 December 2020

Nucleosome structural features and intrinsic properties of the TATAAACGCC repeat sequence

1 reference

12 December 2020

Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues

1 reference

12 December 2020

10.1111/J.1365-2958.2007.05918.X

Identifiers

DOI

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

17850257

1 reference