Fast dynamics of HP35 for folded and urea-unfolded conditions (Q36330580)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22909017%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

Fast dynamics of HP35 for folded and urea-unfolded conditions (English)

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11 February 2020

1

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4

Michael D Fayer

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11 February 2020

author name string

Megan C Thielges

series ordinal

2

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11 February 2020

Stephen R Lynch

series ordinal

3

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11 February 2020

language of work or name

English

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publication date

29 August 2012

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full work available at URL

11 February 2020

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3475495

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published in

Journal of Physical Chemistry B

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11 February 2020

volume

116

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11 February 2020

issue

36

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11 February 2020

page(s)

11024-11031

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Conformational dynamics and stability of HP35 studied with 2D IR vibrational echoes

11 February 2020

cites work

1 reference

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Protein dynamics studied with ultrafast two-dimensional infrared vibrational echo spectroscopy

30 September 2017

1 reference

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Ribonuclease S dynamics measured using a nitrile label with 2D IR vibrational echo spectroscopy

30 September 2017

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Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules

30 September 2017

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Temperature dependent equilibrium native to unfolded protein dynamics and properties observed with IR absorption and 2D IR vibrational echo experiments

30 September 2017

1 reference

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Triplet-triplet energy transfer studies on conformational dynamics in peptides and a protein

30 September 2017

1 reference

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Protein dynamics in cytochrome P450 molecular recognition and substrate specificity using 2D IR vibrational echo spectroscopy.

30 September 2017

1 reference

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Dynamics of the folded and unfolded villin headpiece (HP35) measured with ultrafast 2D IR vibrational echo spectroscopy

30 September 2017

1 reference

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Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations.

30 September 2017

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Nitrile Bonds as Infrared Probes of Electrostatics in Ribonuclease S

30 September 2017

1 reference

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An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

30 September 2017

1 reference

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Nitrile groups as vibrational probes of biomolecular structure and dynamics: an overview

30 September 2017

1 reference

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How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping

30 September 2017

1 reference

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Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Toward quantification of protein backbone-backbone hydrogen bonding energies: An energetic analysis of an amide-to-ester mutation in an alpha-helix within a protein

30 September 2017

1 reference

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Hydrogen bond dynamics in aqueous NaBr solutions

30 September 2017

1 reference

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Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Sub-microsecond protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Myoglobin-CO Substate Structures and Dynamics: Multidimensional Vibrational Echoes and Molecular Dynamics Simulations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Experimental tests of villin subdomain folding simulations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

The role of aromatic residues in the hydrophobic core of the villin headpiece subdomain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

NMR investigation of ferricytochrome c unfolding: detection of an equilibrium unfolding intermediate and residual structure in the denatured state

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Theory of protein folding: the energy landscape perspective

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

NMR structure of the 35-residue villin headpiece subdomain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Denatured states of proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

The Energy Landscapes and Motions of Proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

The Two Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein.

30 September 2017

1 reference

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Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins

30 September 2017

1 reference

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Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Protein denaturation: a small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c.

29 June 2018

1 reference

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Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Taking apart the two-dimensional infrared vibrational echo spectra: more information and elimination of distortions

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: a new approach

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Ultrafast 2D IR vibrational echo spectroscopy

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Ultrafast dynamics of myoglobin without the distal histidine: stimulated vibrational echo experiments and molecular dynamics simulations

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3475495

NMR Characterization of a Peptide Model Provides Evidence for Significant Structure in the Unfolded State of the Villin Headpiece Helical Subdomain†

22 September 2018

1 reference

12 December 2020

Viscosity and density of aqueous solutions of urea and guanidine hydrochloride

1 reference

12 December 2020

Direct NMR evidence for an intermediate preceding the rate-limiting step in the unfolding of ribonuclease A

1 reference

12 December 2020

Probing dynamics of complex molecular systems with ultrafast 2D IR vibrational echo spectroscopy

1 reference

12 December 2020

Residue Specific Resolution of Protein Folding Dynamics Using Isotope-Edited Infrared Temperature Jump Spectroscopy†

1 reference

12 December 2020

Simulated unfolded-state ensemble and the experimental NMR structures of villin headpiece yield similar wide-angle solution X-ray scattering profiles

1 reference

12 December 2020

Characterization of a partly folded protein by NMR methods: studies on the molten globule state of guinea pig alpha-lactalbumin

1 reference

12 December 2020

Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation

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12 December 2020

Identifiers

DOI

10.1021/JP304058X

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22909017%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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11 February 2020

PubMed publication ID

22909017

1 reference