SQID: an intensity-incorporated protein identification algorithm for tandem mass spectrometry (Q36335654)

13 August 2017

SQID: an intensity-incorporated protein identification algorithm for tandem mass spectrometry (English)

1 reference

13 August 2017

Jonathan Goya

3

0 references

Vicki H. Wysocki

object named as

Vicki H Wysocki

5

0 references

author name string

Wenzhou Li

1

1 reference

13 August 2017

Li Ji

2

1 reference

13 August 2017

Guanhong Tan

4

1 reference

13 August 2017

23 February 2011

1 reference

Journal of Proteome Research

13 August 2017

1 reference

13 August 2017

10

1 reference

13 August 2017

4

1 reference

13 August 2017

1593-1602

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Fragmentation pathways of protonated peptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

TANDEM: matching proteins with tandem mass spectra

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Statistical significance for genomewide studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Mobile and localized protons: a framework for understanding peptide dissociation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Probability-based protein identification by searching sequence databases using mass spectrometry data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Improved validation of peptide MS/MS assignments using spectral intensity prediction.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Prediction of low-energy collision-induced dissociation spectra of peptides

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

SILVER helps assign peptides to tandem mass spectra using intensity-based scoring.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Intensity-based statistical scorer for tandem mass spectrometry.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477243

Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21204564

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21204564

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR100959Y

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

21204564

1 reference