SCnorm: robust normalization of single-cell RNA-seq data (Q36349418)

27 October 2017

SCnorm: robust normalization of single-cell RNA-seq data (English)

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27 October 2017

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Christina Kendziorski

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object named as

Christina Kendziorski

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Michael Newton

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Michael Newton

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Rhonda Bacher

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Rhonda Bacher

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author name string

Li-Fang Chu

2

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27 October 2017

Ning Leng

3

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27 October 2017

Audrey P Gasch

4

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27 October 2017

James A Thomson

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27 October 2017

Ron M Stewart

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27 October 2017

17 April 2017

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27 October 2017

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27 October 2017

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27 October 2017

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27 October 2017

584-586

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Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

27 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

The contribution of cell cycle to heterogeneity in single-cell RNA-seq data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Design and computational analysis of single-cell RNA-sequencing experiments

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

A survey of best practices for RNA-seq data analysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

A cost-effective RNA sequencing protocol for large-scale gene expression studies

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

HTSeq--a Python framework to work with high-throughput sequencing data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Bayesian approach to single-cell differential expression analysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

GC-content normalization for RNA-Seq data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Chemically defined conditions for human iPSC derivation and culture

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Differential expression analysis for sequence count data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

A scaling normalization method for differential expression analysis of RNA-seq data

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Visualizing spatiotemporal dynamics of multicellular cell-cycle progression

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Capturing heterogeneity in gene expression studies by surrogate variable analysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

Adjusting batch effects in microarray expression data using empirical Bayes methods

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473255

29 June 2018

Identifiers

DOI

10.1038/NMETH.4263

1 reference

27 October 2017

1 reference

27 October 2017

PubMed publication ID

28418000

1 reference