Flexible connection of the N-terminal domain in ClpB modulates substrate binding and the aggregate reactivation efficiency (Q36365102)

13 August 2017

Flexible connection of the N-terminal domain in ClpB modulates substrate binding and the aggregate reactivation efficiency (English)

1 reference

13 August 2017

5

Sue Wickner

1 reference

13 August 2017

Ting Zhang

1

1 reference

13 August 2017

Elizabeth A Ploetz

2

1 reference

13 August 2017

Maria Nagy

3

1 reference

13 August 2017

Shannon M Doyle

4

1 reference

13 August 2017

Paul E Smith

6

1 reference

13 August 2017

Michal Zolkiewski

7

1 reference

13 August 2017

language of work or name

English

0 references

publication date

15 September 2012

1 reference

13 August 2017

1 reference

13 August 2017

80

1 reference

13 August 2017

12

1 reference

13 August 2017

2758-2768

1 reference

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Orientation of the amino-terminal domain of ClpB affects the disaggregation of the protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Aggregate reactivation mediated by the Hsp100 chaperones

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Dynamic allostery: linkers are not merely flexible

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Species-specific collaboration of heat shock proteins (Hsp) 70 and 100 in thermotolerance and protein disaggregation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

CryoEM structure of Hsp104 and its mechanistic implication for protein disaggregation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Developing Force Fields from the Microscopic Structure of Solutions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Synergistic cooperation between two ClpB isoforms in aggregate reactivation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Asymmetric deceleration of ClpB or Hsp104 ATPase activity unleashes protein-remodeling activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Canonical sampling through velocity rescaling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

AAA+ proteins: have engine, will work

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Thermotolerance requires refolding of aggregated proteins by substrate translocation through the central pore of ClpB.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Crystal structure of E. coli Hsp100 ClpB nucleotide-binding domain 1 (NBD1) and mechanistic studies on ClpB ATPase activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Stability and interactions of the amino-terminal domain of ClpB from Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Modeling of loops in protein structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Sequential mechanism of solubilization and refolding of stable protein aggregates by a bichaperone network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Nucleotide-dependent oligomerization of ClpB from Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Site-directed mutagenesis of the dual translational initiation sites of the clpB gene of Escherichia coli and characterization of its gene products

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Comparative protein modelling by satisfaction of spatial restraints

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Derivation of rules for comparative protein modeling from a database of protein structure alignments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

ClpB is the Escherichia coli heat shock protein F84.1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

The flexible attachment of the N-domains to the ClpA ring body allows their use on demand.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486956

Crystal structure of the E. coli Hsp100 ClpB N-terminal domain

28 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Nucleotide-induced switch in oligomerization of the AAA+ ATPase ClpB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

The amino-terminal domain of ClpB supports binding to strongly aggregated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

The N-terminal domain of Escherichia coli ClpB enhances chaperone function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

The missing term in effective pair potentials

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Conserved amino acid residues within the amino-terminal domain of ClpB are essential for the chaperone activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Walker-A threonine couples nucleotide occupancy with the chaperone activity of the AAA+ ATPase ClpB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Substrate recognition by the AAA+ chaperone ClpB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

M domains couple the ClpB threading motor with the DnaK chaperone activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24159

ClpB cooperates with DnaK, DnaJ, and GrpE in suppressing protein aggregation. A novel multi-chaperone system from Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22890624

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DnaK-mediated association of ClpB to protein aggregates. A bichaperone network at the aggregate surface

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22890624

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.24159

1 reference

13 August 2017

1 reference

13 August 2017

1 reference