Genome Sequences of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C (Q36370973)

13 August 2017

Genome Sequences of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C (English)

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

main subject

Vibrio parahaemolyticus

object named as

Vibrio parahaemolyticus

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

22 March 2024

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

3

Forest Rohwer

1 reference

13 August 2017

5

Anca M. Segall

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

22 March 2024

author name string

Victor Seguritan

1

1 reference

13 August 2017

I-Wei Feng

2

1 reference

13 August 2017

Mark Swift

4

1 reference

13 August 2017

language of work or name

English

0 references

publication date

1 November 2003

1 reference

full work available at URL

13 August 2017

https://europepmc.org/articles/pmc219397?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

https://europepmc.org/articles/PMC219397

22 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

https://europepmc.org/articles/PMC219397?pdf=render

22 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

https://doi.org/10.1128/jb.185.21.6434-6447.2003

22 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563879

https://journals.asm.org/doi/pdf/10.1128/JB.185.21.6434-6447.2003

22 March 2024

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

published in

Journal of Bacteriology

1 reference

13 August 2017

185

1 reference

13 August 2017

21

1 reference

13 August 2017

6434-6447

1 reference

Mechanisms and rates of decay of marine viruses in seawater.

13 August 2017

1 reference

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Origins of highly mosaic mycobacteriophage genomes

30 September 2017

1 reference

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30 September 2017

Global phage diversity

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Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

30 September 2017

Marine phage genomics

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Genomic analysis of uncultured marine viral communities

30 September 2017

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The Phage Proteomic Tree: a genome-based taxonomy for phage

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30 September 2017

1 reference

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30 September 2017

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Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera

30 September 2017

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Production of shotgun libraries using random amplification

30 September 2017

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Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer

30 September 2017

1 reference

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Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

30 September 2017

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Rapid virus production and removal as measured with fluorescently labeled viruses as tracers

30 September 2017

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The Yersinia high-pathogenicity island.

30 September 2017

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Basic concepts of artificial neural network (ANN) modeling and its application in pharmaceutical research

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Virioplankton: Viruses in Aquatic Ecosystems

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Heuristic approach to deriving models for gene finding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Marine viruses and their biogeochemical and ecological effects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

30 September 2017

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Recombination and recombination-dependent DNA replication in bacteriophage T4.

30 September 2017

1 reference

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GCUA: general codon usage analysis

30 September 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Amelioration of bacterial genomes: rates of change and exchange

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Effects of sunlight on bacteriophage viability and structure

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

A role for bacteriophages in the evolution and transfer of bacterial virulence determinants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Lysogenic conversion by a filamentous phage encoding cholera toxin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Virus DNA packaging: the strategy used by phage lambda

30 September 2017

1 reference

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Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tail fibres

30 September 2017

1 reference

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Mechanisms underlying expression of Tn10 encoded tetracycline resistance

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Virulence markers of Shiga-like toxin-producing Escherichia coli strains originating from healthy domestic animals of different species.

30 September 2017

1 reference

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Evolution in bacteria: evidence for a universal substitution rate in cellular genomes

30 September 2017

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Homologous recombination in Escherichia coli: dependence on substrate length and homology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

DNA probes for Shiga-like toxins I and II and for toxin-converting bacteriophages

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

High abundance of viruses found in aquatic environments.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Characterization of the cryptic lambdoid prophage DLP12 of Escherichia coli and overlap of the DLP12 integrase gene with the tRNA gene argU.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Improved detection of helix-turn-helix DNA-binding motifs in protein sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

The complete sequence of marine bacteriophage VpV262 infecting vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment

30 September 2017

1 reference

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The complete genome sequence of PM2, the first lipid-containing bacterial virus To Be isolated

28 June 2018

1 reference

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The genetic relationship between virulent and temperate Streptococcus thermophilus bacteriophages: whole genome comparison of cos-site phages Sfi19 and Sfi21.

28 June 2018

1 reference

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A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

Structural relationships in the OmpR family of winged-helix transcription factors

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219397

DNA sequence of tail fiber genes of coliphage 186 and evidence for a common ancestor shared by dsDNA phage fiber genes

28 June 2018

1 reference

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Evidence for a second conserved arginine residue in the integrase family of recombination proteins

28 June 2018

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Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus.

28 June 2018

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Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.

21 September 2018

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Inducible prophages contribute to Salmonella virulence in mice.

21 September 2018

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The gene for toxic shock toxin is carried by a family of mobile pathogenicity islands in Staphylococcus aureus.

21 September 2018

1 reference

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21 September 2018

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21 September 2018

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Lysogeny and Lytic Viral Production during a Bloom of the Cyanobacterium Synechococcus spp

21 September 2018

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5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14563879

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular Microbiology

13

16

1075

1996

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

Microbial microdiversity

21

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

Genetic diversity of related vibriophages isolated from marine environments around Florida and Hawaii, USA

22 March 2024

27

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

22 March 2024

42

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

the heart

53

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6434-6447.2003

22 March 2024

Identifiers

1 reference

13 August 2017

1 reference

13 August 2017

1 reference