Stochastic and deterministic assembly processes in subsurface microbial communities (Q36401468)

14 August 2017

Stochastic and deterministic assembly processes in subsurface microbial communities (English)

1 reference

14 August 2017

James C Stegen

1

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Allan E Konopka

series ordinal

3

object named as

Allan E Konopka

1 reference

14 August 2017

4

James K Fredrickson

1 reference

14 August 2017

2

Xueju Lin

1 reference

14 August 2017

29 March 2012

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14 August 2017

1 reference

14 August 2017

6

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14 August 2017

9

1 reference

14 August 2017

1653-1664

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2012.22

14 August 2017

0 references

cites work

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer

1 reference

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Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

30 September 2017

1 reference

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The phylogenetic diversity of metagenomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Defining seasonal marine microbial community dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Advances, challenges and a developing synthesis of ecological community assembly theory

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Disentangling the importance of ecological niches from stochastic processes across scales

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Exploring tree-habitat associations in a Chinese subtropical forest plot using a molecular phylogeny generated from DNA barcode loci

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Seed arrival and ecological filters interact to assemble high-diversity plant communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Combined niche and neutral effects in a microbial wastewater treatment community.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Microbial community structure across the tree of life in the extreme Río Tinto

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Conceptual synthesis in community ecology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Stochastic community assembly causes higher biodiversity in more productive environments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

QIIME allows analysis of high-throughput community sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Relative roles of niche and neutral processes in structuring a soil microbial community

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Local immigration, competition from dominant guilds, and the ecological assembly of high-diversity pine savannas

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Predators temper the relative importance of stochastic processes in the assembly of prey metacommunities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Quantifying environmental adaptation of metabolic pathways in metagenomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Fumarole-supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Emerging patterns in the comparative analysis of phylogenetic community structure.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

The origins of ecological diversity in prokaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Drought mediates the importance of stochastic community assembly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Toward an ecological classification of soil bacteria.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Annually reoccurring bacterial communities are predictable from ocean conditions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Phylogenetic clustering and overdispersion in bacterial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

UniFrac: a new phylogenetic method for comparing microbial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Phylogenetic classification and the universal tree

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

River-induced flow dynamics in long-screen wells and impact on aqueous samples.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

The ecological coherence of high bacterial taxonomic ranks

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Inhospitable sweetness: nectar filtering of pollinator-borne inocula leads to impoverished, phylogenetically clustered yeast communities.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Trait evolution, community assembly, and the phylogenetic structure of ecological communities

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498916

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

21 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Mechanisms of Maintenance of Species Diversity

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Hidden patterns of phylogenetic non-stationarity overwhelm comparative analyses of niche conservatism and divergence

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

More species, but all do the same: contrasting effects of flood disturbance on ground beetle functional and species diversity

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Phylogenetic turnover in tropical tree communities: impact of environmental filtering, biogeography and mesoclimatic niche conservatism

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Estimating the Dimension of a Model

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

ChromoScan: a scan statistic application for identifying chromosomal regions in genomic studies

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Phylogenies and Community Ecology

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Assembly Rules, Null Models, and Trait Dispersion: New Questions from Old Patterns

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.22

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2012.22

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

PMCID

3498916