Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation. (Q36406071)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26546131%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation (English)

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29 February 2020

7

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29 February 2020

author name string

Jonathan Neve

1

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29 February 2020

Kaspar Burger

2

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29 February 2020

Wencheng Li

3

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29 February 2020

Mainul Hoque

4

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29 February 2020

Radhika Patel

5

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29 February 2020

Bin Tian

6

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29 February 2020

Andre Furger

8

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29 February 2020

publication date

6 November 2015

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29 February 2020

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29 February 2020

volume

26

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issue

1

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page(s)

24-35

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Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation

29 February 2020

cites work

1 reference

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Alternative 3' UTRs act as scaffolds to regulate membrane protein localization

30 September 2017

1 reference

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Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells

30 September 2017

1 reference

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APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

30 September 2017

1 reference

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RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs

30 September 2017

1 reference

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R-loops induce repressive chromatin marks over mammalian gene terminators

30 September 2017

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Widespread intron retention in mammals functionally tunes transcriptomes

30 September 2017

1 reference

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Alternative polyadenylation: less than meets the eye?

30 September 2017

1 reference

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CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.

30 September 2017

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Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal

30 September 2017

1 reference

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Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.

30 September 2017

1 reference

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3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts

30 September 2017

1 reference

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A dynamic interplay between alternative polyadenylation and microRNA regulation: implications for cancer (Review).

30 September 2017

1 reference

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The double-stranded RNA binding domain of human Dicer functions as a nuclear localization signal

30 September 2017

1 reference

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Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation.

30 September 2017

1 reference

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Alternative cleavage and polyadenylation: the long and short of it

30 September 2017

1 reference

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Widespread and extensive lengthening of 3' UTRs in the mammalian brain

30 September 2017

1 reference

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Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells

30 September 2017

1 reference

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Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

30 September 2017

1 reference

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Landscape of transcription in human cells

30 September 2017

1 reference

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Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation

30 September 2017

1 reference

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U1 snRNP determines mRNA length and regulates isoform expression

30 September 2017

1 reference

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An in-depth map of polyadenylation sites in cancer

30 September 2017

1 reference

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Translational control by changes in poly(A) tail length: recycling mRNAs.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

A quantitative atlas of polyadenylation in five mammals

30 September 2017

1 reference

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Neuron-specific ELAV/Hu proteins suppress HuR mRNA during neuronal differentiation by alternative polyadenylation

30 September 2017

1 reference

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Transcriptional activity regulates alternative cleavage and polyadenylation

30 September 2017

1 reference

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Multiple factors in the early splicing complex are involved in the nuclear retention of pre-mRNAs in mammalian cells

30 September 2017

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Mechanisms and consequences of alternative polyadenylation

30 September 2017

1 reference

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Ending the message: poly(A) signals then and now

30 September 2017

1 reference

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RNA polymerase II kinetics in polo polyadenylation signal selection.

30 September 2017

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DREME: motif discovery in transcription factor ChIP-seq data

30 September 2017

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Analysis of microRNA turnover in mammalian cells following Dicer1 ablation.

30 September 2017

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Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

30 September 2017

1 reference

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Alpha-MSH regulates intergenic splicing of MC1R and TUBB3 in human melanocytes

30 September 2017

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Dicer is associated with ribosomal DNA chromatin in mammalian cells

30 September 2017

1 reference

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Mammalian microRNAs predominantly act to decrease target mRNA levels

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Differential regulation of microRNA stability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Reprogramming of 3' untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Xist RNA is confined to the nuclear territory of the silenced X chromosome throughout the cell cycle

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Molecular basis for target RNA recognition and cleavage by human RISC.

30 September 2017

1 reference

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Quantifying similarity between motifs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

30 September 2017

1 reference

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Two G-rich regulatory elements located adjacent to and 440 nucleotides downstream of the core poly(A) site of the intronless melanocortin receptor 1 gene are critical for efficient 3' end processing

30 September 2017

1 reference

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Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells

30 September 2017

1 reference

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Conservation of alternative polyadenylation patterns in mammalian genes

30 September 2017

1 reference

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Control of translation and mRNA degradation by miRNAs and siRNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

ARE-mRNA degradation requires the 5'-3' decay pathway.

30 September 2017

1 reference

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A large-scale analysis of mRNA polyadenylation of human and mouse genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

A slow RNA polymerase II affects alternative splicing in vivo

30 September 2017

1 reference

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The proline-rich homeodomain protein, PRH, is a tissue-specific inhibitor of eIF4E-dependent cyclin D1 mRNA transport and growth

30 September 2017

1 reference

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Integrating mRNA processing with transcription

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Specific transcriptional pausing activates polyadenylation in a coupled in vitro system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Human nuclear Dicer restricts the deleterious accumulation of endogenous double-stranded RNA.

30 September 2017

1 reference

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Genome-wide maps of polyadenylation reveal dynamic mRNA 3'-end formation in mammalian cell lineages

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4691748

CPEB1 coordinates alternative 3′-UTR formation with translational regulation

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26546131

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.193995.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26546131%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26546131%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

26546131

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26546131%20AND%20SRC:MED&resulttype=core&format=json