The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs (Q36419217)

14 August 2017

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs (English)

1 reference

14 August 2017

0 references

Sunit Jain

2

0 references

Patrick D. Schloss

object named as

Patrick D Schloss

series ordinal

4

0 references

Karthik Anantharaman

series ordinal

3

object named as

Karthik Anantharaman

1 reference

14 August 2017

Ryan A Lesniewski

1

1 reference

14 August 2017

Gregory J Dick

series ordinal

5

1 reference

14 August 2017

language of work or name

1 reference

14 June 2012

1 reference

14 August 2017

1 reference

14 August 2017

6

1 reference

14 August 2017

12

1 reference

14 August 2017

2257-2268

1 reference

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Search and clustering orders of magnitude faster than BLAST

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Identification of Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine Hydrocarbon Seeps by Stable Isotope Probing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Distributions of putative aerobic methanotrophs in diverse pelagic marine environments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Community-wide analysis of microbial genome sequence signatures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Mn(II) oxidation is catalyzed by heme peroxidases in "Aurantimonas manganoxydans" strain SI85-9A1 and Erythrobacter sp. strain SD-21.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Microbial community gene expression in ocean surface waters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Temporal and spatial archaeal colonization of hydrothermal vent deposits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Community genomics among stratified microbial assemblages in the ocean's interior

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Molecular analysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Molecular Characterization of Sulfate-Reducing Bacteria in the Guaymas Basin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Rfam: an RNA family database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

Manganese(II)-oxidizing Bacillus spores in Guaymas Basin hydrothermal sediments and plumes

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504965

A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.

28 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Soluble and particulate methane monooxygenase gene clusters in the marine methanotroph Methylomicrobium sp. strain NI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

The Calyptogena magnifica chemoautotrophic symbiont genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Bacterial chemolithotrophy in the ocean is associated with sinking particles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Microorganisms in deep-sea hydrothermal plumes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Carbon release by off-axis magmatism in a young sedimented spreading centre

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Hydrothermal contribution to the oceanic dissolved iron inventory

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Dissolved and particulate organic carbon in hydrothermal plumes from the East Pacific Rise, 9°50′N

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Preservation of iron(II) by carbon-rich matrices in a hydrothermal plume

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Bacterial scavenging of Mn and Fe in a mid- to far-field hydrothermal particle plume

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi seamount

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

7 January 2021

Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin deep-sea hydrothermal plume

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

7 January 2021

Manganese scavenging and oxidation at hydrothermal vents and in vent plumes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

7 January 2021

BIOGENIC MANGANESE OXIDES: Properties and Mechanisms of Formation

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.63

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2012.63

1 reference

Dimensions Publication ID

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

22695860

1 reference