Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere. (Q36441102)

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19 January 2020

review article

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title

Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere (English)

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19 January 2020

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4

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19 January 2020

John Morrissey

6

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19 January 2020

Fergal O'Gara

7

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19 January 2020

author name string

P D Kiely

1

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19 January 2020

J M Haynes

2

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19 January 2020

C H Higgins

3

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19 January 2020

G L Mark

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19 January 2020

publication date

5 April 2006

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19 January 2020

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19 January 2020

volume

51

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19 January 2020

issue

3

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19 January 2020

page(s)

257-266

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Regulation of production of the antifungal metabolite 2,4-diacetylphloroglucinol in Pseudomonas fluorescens F113: genetic analysis of phlF as a transcriptional repressor

19 January 2020

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Correlation between protein and mRNA abundance in yeast

21 January 2018

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Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00248-006-9019-Y

Quantitative analysis of target components by comprehensive two-dimensional gas chromatography

21 January 2018

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12 December 2020

Secondary products in mycorrhizal roots of tobacco and tomato

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12 December 2020

Proteomic analysis of differentially expressed proteins induced by rice blast fungus and elicitor in suspension-cultured rice cells

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12 December 2020

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

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12 December 2020

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

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12 December 2020

Applications of autofluorescent proteins for in situ studies in microbial ecology.

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12 December 2020

Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland

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12 December 2020

Coordinated plant defense responses in Arabidopsis revealed by microarray analysis.

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12 December 2020

Colonization pattern of the biocontrol strain Pseudomonas chlororaphis MA 342 on barley seeds visualized by using green fluorescent protein.

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12 December 2020

Electrospray ionization mass spectrometry analysis of changes in phospholipids in RBL-2H3 mastocytoma cells during degranulation

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12 December 2020

Use of green fluorescent protein to visualize the early events of symbiosis between Rhizobium meliloti and alfalfa (Medicago sativa).

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12 December 2020

Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy

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12 December 2020

Systemic resistance induced by rhizosphere bacteria.

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12 December 2020

Green fluorescent protein as a marker for Pseudomonas spp

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12 December 2020

Transcriptome profiling of bacterial responses to root exudates identifies genes involved in microbe-plant interactions

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12 December 2020

Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays

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12 December 2020

DGGE/TGGE a method for identifying genes from natural ecosystems.

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12 December 2020

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

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12 December 2020

Monitoring Population Size, Activity, and Distribution of gfp-luxAB-Tagged Pseudomonas fluorescens SBW25 during Colonization of Wheat

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12 December 2020

What can bacterial genome research teach us about bacteria-plant interactions?

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12 December 2020

Bacterial activity in the rhizosphere analyzed at the single-cell level by monitoring ribosome contents and synthesis rates

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12 December 2020

Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed

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12 December 2020

A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions

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12 December 2020

Proteome research: complementarity and limitations with respect to the RNA and DNA worlds.

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12 December 2020

Are microbes at the root of a solution to world food production? Rational exploitation of interactions between microbes and plants can help to transform agriculture

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12 December 2020

Use of in vivo expression technology to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: discovery of expressed sequences with novel genetic organization

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12 December 2020

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

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12 December 2020

Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays

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12 December 2020

Proteome analysis of cultivar-specific interactions between Rhizobium leguminosarum biovar trifolii and subterranean clover cultivar Woogenellup.

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12 December 2020

Transgenic plants as factories for biopharmaceuticals

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12 December 2020

Proteome analysis and identification of symbiosis-related proteins from Medicago truncatula Gaertn. by two-dimensional electrophoresis and mass spectrometry

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12 December 2020

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"

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12 December 2020

Adaptation of Pseudomonas fluorescens to the plant rhizosphere

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12 December 2020

Proteomic analysis of changes in the extracellular matrix of Arabidopsis cell suspension cultures induced by fungal elicitors

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12 December 2020

The transcriptome of Arabidopsis thaliana during systemic acquired resistance.

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12 December 2020

Directed proteomics identifies a plant-specific protein rapidly phosphorylated in response to bacterial and fungal elicitors

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12 December 2020

Systematic functional analysis of the yeast genome

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12 December 2020

Stable-isotope probing as a tool in microbial ecology

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12 December 2020

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

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12 December 2020

Monitoring Azospirillum-wheat interactions using the gfp and gusA genes constitutively expressed from a new broad-host range vector.

1 reference

12 December 2020

Enhancement of plant-microbe interactions using a rhizosphere metabolomics-driven approach and its application in the removal of polychlorinated biphenyls

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12 December 2020

Molecular mechanisms of defense by rhizobacteria against root disease

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12 December 2020

RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

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12 December 2020

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

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12 December 2020

A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction

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12 December 2020

Colonisation of poplar trees by gfp expressing bacterial endophytes.

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12 December 2020

Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil

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12 December 2020

Pseudomonas for biocontrol of phytopathogens: from functional genomics to commercial exploitation.

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12 December 2020

Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil

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12 December 2020

Metabolomics in systems biology

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12 December 2020

Characterization of interactions between the transcriptional repressor PhlF and its binding site at the phlA promoter in Pseudomonas fluorescens F113.

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12 December 2020

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

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12 December 2020

Microarrays: biotechnology's discovery platform for functional genomics.

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12 December 2020

Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis

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12 December 2020

Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment

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12 December 2020

Analysis of infection thread development using Gfp- and DsRed-expressing Sinorhizobium meliloti.

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12 December 2020

Transcriptome analysis of the Pseudomonas aeruginosa response to iron

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12 December 2020

Genomics for the ecological toolbox.

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12 December 2020

Use of bromodeoxyuridine immunocapture to identify active bacteria associated with arbuscular mycorrhizal hyphae

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12 December 2020

13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere.

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12 December 2020

The putative permease PhlE of Pseudomonas fluorescens F113 has a role in 2,4-diacetylphloroglucinol resistance and in general stress tolerance.

1 reference

12 December 2020

Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients

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12 December 2020

Green fluorescent protein-marked Pseudomonas fluorescens: localization, viability, and activity in the natural barley rhizosphere.

1 reference

12 December 2020

10.1007/S00248-006-9019-Y

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16596439%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

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