Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps (Q36475389)

14 August 2017

1 reference

title

Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps (English)

1 reference

cryogenic electron microscopy

14 August 2017

main subject

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2

Joachim Frank

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author name string

Kakoli Mitra

series ordinal

1

1 reference

14 August 2017

publication date

1 January 2006

1 reference

Annual Review of Biophysics and Biomolecular Structure

14 August 2017

published in

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14 August 2017

volume

35

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14 August 2017

page(s)

299-317

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Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

14 August 2017

cites work

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11 October 2022

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Ribosomal RNA Kink-turn Motif—A Flexible Molecular Hinge

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Direct Visualization of A-, P-, and E-Site Transfer RNAs in the Escherichia coli Ribosome

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

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11 October 2022

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X-ray structure of a protein-conducting channel

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11 October 2022

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Conformational change of proteins arising from normal mode calculations

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11 October 2022

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11 October 2022

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Structures of the bacterial ribosome at 3.5 A resolution

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11 October 2022

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Peptidyl-tRNA regulates the GTPase activity of translation factors

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11 October 2022

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Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

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11 October 2022

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Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

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11 October 2022

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Architecture of prokaryotic ribosomes

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11 October 2022

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Conformational flexibility of bacterial RNA polymerase.

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Docking of atomic models into reconstructions from electron microscopy

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11 October 2022

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Visualization of elongation factor Tu on the Escherichia coli ribosome.

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11 October 2022

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Locking and unlocking of ribosomal motions

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11 October 2022

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The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA.

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11 October 2022

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Structure of the E. coli protein-conducting channel bound to a translating ribosome

1 reference

11 October 2022

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EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome

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11 October 2022

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Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

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11 October 2022

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Ribosome structure and the mechanism of translation

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11 October 2022

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The kink-turn: a new RNA secondary structure motif

1 reference

11 October 2022

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Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation

1 reference

11 October 2022

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Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases

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Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

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11 October 2022

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A negative staining method for high resolution electron microscopy of viruses

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Escherichia coli 70 S ribosome at 15 A resolution by cryo-electron microscopy: localization of fMet-tRNAfMet and fitting of L1 protein

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Low resolution meets high: towards a resolution continuum from cells to atoms

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Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies

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11 October 2022

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Making sense of mimic in translation termination

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11 October 2022

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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11 October 2022

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SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes

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11 October 2022

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Solution structure of the E. coli 70S ribosome at 11.5 A resolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Intermediate states in the movement of transfer RNA in the ribosome

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11 October 2022

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A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3.

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11 October 2022

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Dynamics of a small globular protein in terms of low-frequency vibrational modes

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11 October 2022

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Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Domains of initiator tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3

1 reference

11 October 2022

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Real space refinement of acto-myosin structures from sectioned muscle.

1 reference

11 October 2022

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Refinement of protein dynamic structure: normal mode refinement

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation

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11 October 2022

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Variational calculation of the normal modes of a large macromolecule: methods and some initial results

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Identifiers

DOI

10.1146/ANNUREV.BIOPHYS.35.040405.101950

1 reference

release_46iuoxpp7jh7tofuw5jqux5zey

14 August 2017

Fatcat ID

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https://api.fatcat.wiki/v0/release/46iuoxpp7jh7tofuw5jqux5zey

Fatcat

reference URL

mapped directly with Wikidata item

24 November 2022

based on heuristic

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