The Sterolgene v0 cDNA microarray: a systemic approach to studies of cholesterol homeostasis and drug metabolism. (Q36487390)

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2 January 2020

title

The Sterolgene v0 cDNA microarray: a systemic approach to studies of cholesterol homeostasis and drug metabolism (English)

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2 January 2020

2

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2 January 2020

Damjana Rozman

9

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2 January 2020

author name string

Tadeja Rezen

1

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2 January 2020

Klementina Fon Tacer

3

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2 January 2020

Drago Kuzman

4

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2 January 2020

Adrian Roth

5

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2 January 2020

Denis Pompon

6

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2 January 2020

Lawrence P Aggerbeck

7

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2 January 2020

Urs A Meyer

8

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2 January 2020

language of work or name

English

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publication date

11 February 2008

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2 January 2020

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2 January 2020

volume

9

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2 January 2020

page(s)

76

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Robust interlaboratory reproducibility of a gene expression signature measurement consistent with the needs of a new generation of diagnostic tools

2 January 2020

cites work

1 reference

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Transcriptional profiling of genes induced in the livers of patients treated with carbamazepine

30 September 2017

1 reference

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Converting a breast cancer microarray signature into a high-throughput diagnostic test.

30 September 2017

1 reference

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Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray

30 September 2017

1 reference

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

30 September 2017

1 reference

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Comparison of gene coverage of mouse oligonucleotide microarray platforms

30 September 2017

1 reference

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Transcriptional signatures of normal human mammary epithelial cells in response to benzo[a]pyrene exposure: a comparison of three microarray platforms

30 September 2017

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Production of custom microarrays for neuroscience research

30 September 2017

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Inconsistencies over time in 5% of NetAffx probe-to-gene annotations

30 September 2017

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A study of inter-lab and inter-platform agreement of DNA microarray data

30 September 2017

1 reference

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Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

30 September 2017

1 reference

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Standardizing global gene expression analysis between laboratories and across platforms.

30 September 2017

1 reference

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Independence and reproducibility across microarray platforms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Regulatory network of lipid-sensing nuclear receptors: roles for CAR, PXR, LXR, and FXR.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Are data from different gene expression microarray platforms comparable?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Starvation response in mouse liver shows strong correlation with life-span-prolonging processes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Evaluation of gene expression measurements from commercial microarray platforms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Novel putative SREBP and LXR target genes identified by microarray analysis in liver of cholesterol-fed mice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Microarray results: how accurate are they?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Diverse roles of the nuclear orphan receptor CAR in regulating hepatic genes in response to phenobarbital

30 September 2017

1 reference

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The role of orphan nuclear receptors in the regulation of cholesterol homeostasis

30 September 2017

1 reference

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P450 gene induction by structurally diverse xenochemicals: central role of nuclear receptors CAR, PXR, and PPAR.

30 September 2017

1 reference

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Specific and overlapping functions of the nuclear hormone receptors CAR and PXR in xenobiotic response

30 September 2017

1 reference

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TNF-alpha interferes with lipid homeostasis and activates acute and proatherogenic processes.

28 June 2018

1 reference

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Disruption of tumor necrosis factor-alpha gene diminishes the development of atherosclerosis in ApoE-deficient mice

21 September 2018

1 reference

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Development of cDNA microarray for expression profiling of estrogen-responsive genes

21 September 2018

1 reference

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Gene expression profiling of drug metabolism and toxicology markers using a low-density DNA microarray

21 September 2018

1 reference

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LXR alpha is the dominant regulator of CYP7A1 transcription

21 September 2018

1 reference

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Enhanced induction of cytochrome P450 enzymes and CAR binding in TNF (p55(-/-)/p75(-/-)) double receptor knockout mice following phenobarbital treatment

21 September 2018

1 reference

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Multiple-laboratory comparison of microarray platforms

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2262072

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18261244

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18261244

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Induction of 5-aminolevulinate synthase by drugs is independent of increased apocytochrome P450 synthesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18261244

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-76

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18261244%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18261244%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

18261244

1 reference