The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy (Q36491346)

14 August 2017

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy (English)

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14 August 2017

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14 August 2017

Cédric Berney

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Gaétan Burgaud

Gaétan Burgaud

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Ian Probert

Ian Probert

26

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Javier del Campo

Javier Del Campo

11

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Ramiro Logares

Ramiro Logares

19

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Marina Montresor

Marina Montresor

22

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John R. Dolan

John R Dolan

12

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Ramon Massana

Ramon Massana

21

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Daniel Vaulot

Daniel Vaulot

30

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Richard Christen

Richard Christen

32

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Maria Holzmann

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Maria Holzmann

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14 August 2017

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Bente Edvardsen

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Micah Dunthorn

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Colomban de Vargas

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Dipankar Bachar

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Lucie Bittner

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Christophe Boutte

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14 August 2017

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Johan Decelle

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Raphael Morard

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Raffaele Siano

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Thorsten Stoeck

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14 August 2017

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Fabrice Not

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David Bass

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Noan Le Bescot

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14 August 2017

Laure Guillou

1

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14 August 2017

Wiebe H C F Kooistra

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14 August 2017

Anne-Laure Sauvadet

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Pascal Zimmermann

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14 August 2017

language of work or name

English

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publication date

27 November 2012

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14 August 2017

Nucleic Acids Research

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14 August 2017

41

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14 August 2017

Database issue

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14 August 2017

D597-604

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Creative Commons Attribution-NonCommercial 3.0 Unported

14 August 2017

start time

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

The Revised Classification of Eukaryotes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Eukaryotic richness in the abyss: insights from pyrotag sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Parallelization of the MAFFT multiple sequence alignment program

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Clustal W and Clustal X version 2.0

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Class I integron with a group II intron detected in an Escherichia coli strain from a free-range reindeer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Molecular detection of the oyster parasite Mikrocytos mackini, and a preliminary phylogenetic analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

ScripTree: scripting phylogenetic graphics.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

Multiple group II self-splicing introns in mobile DNA from Escherichia coli.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531120

21 September 2018

Identifiers

DOI

10.1093/NAR/GKS1160

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journals/nar/GuillouBABBBBBVDCDDEHKLBLMMMMNPPSSSVZC13

14 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 August 2017

1 reference