Digestion and depletion of abundant proteins improves proteomic coverage (Q36492309)

14 August 2017

Digestion and depletion of abundant proteins improves proteomic coverage (English)

1 reference

14 August 2017

Bryan R Fonslow

1

1 reference

14 August 2017

Benjamin D Stein

2

1 reference

14 August 2017

Kristofor J Webb

3

1 reference

14 August 2017

Tao Xu

4

1 reference

14 August 2017

Jeong Choi

5

1 reference

14 August 2017

Sung Kyu Park

6

1 reference

14 August 2017

John R Yates

7

1 reference

14 August 2017

language of work or name

1 reference

18 November 2012

1 reference

14 August 2017

1 reference

14 August 2017

10

1 reference

14 August 2017

1

1 reference

14 August 2017

54-56

1 reference

https://scigraph.springernature.com/pub.10.1038/nmeth.2250

14 August 2017

0 references

cites work

A protease for 'middle-down' proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Liquid-phase-based separation systems for depletion, prefractionation and enrichment of proteins in biological fluids for in-depth proteomics analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Validation of tandem mass spectrometry database search results using DTASelect

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

A quantitative analysis software tool for mass spectrometry-based proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

The biological impact of mass-spectrometry-based proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Shotgun identification of protein modifications from protein complexes and lens tissue

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Mass spectrometry in high-throughput proteomics: ready for the big time.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Sample preparation and digestion for proteomic analyses using spin filters

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

A method for the comprehensive proteomic analysis of membrane proteins

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531578

Identification of membrane proteins from mammalian cell/tissue using methanol-facilitated solubilization and tryptic digestion coupled with 2D-LC-MS/MS

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23160281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The implications of proteolytic background for shotgun proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23160281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Spin filter-based sample preparation for shotgun proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23160281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2250

1 reference

14 August 2017

1 reference

14 August 2017

1 reference