Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus (Q36532648)

14 August 2017

Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus (English)

1 reference

14 August 2017

2

Anne E Simon

1 reference

14 August 2017

Feng Gao

1

1 reference

PMCID

4737148

14 August 2017

language of work or name

English

0 references

publication date

17 November 2015

1 reference

14 August 2017

Nucleic Acids Research

1 reference

14 August 2017

44

1 reference

14 August 2017

878-895

1 reference

14 August 2017

2

1 reference

Creative Commons Attribution 4.0 International

14 August 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting

1 reference

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Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways

30 September 2017

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The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers

30 September 2017

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Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway

30 September 2017

1 reference

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Structure and dynamics of the HIV-1 frameshift element RNA

30 September 2017

1 reference

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Transactivation of programmed ribosomal frameshifting by a viral protein

30 September 2017

1 reference

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The kissing-loop T-shaped structure translational enhancer of Pea enation mosaic virus can bind simultaneously to ribosomes and a 5' proximal hairpin

30 September 2017

1 reference

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3' cap-independent translation enhancers of plant viruses

30 September 2017

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Regulation of programmed ribosomal frameshifting by co-translational refolding RNA hairpins.

30 September 2017

1 reference

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30 September 2017

1 reference

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RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus.

30 September 2017

1 reference

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HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

A ribosome-binding, 3' translational enhancer has a T-shaped structure and engages in a long-distance RNA-RNA interaction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Spacer-length dependence of programmed -1 or -2 ribosomal frameshifting on a U6A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Non-canonical translation in RNA viruses

30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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mRNA pseudoknot structures can act as ribosomal roadblocks

30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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Frameshifting RNA pseudoknots: structure and mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Apical loop-internal loop RNA pseudoknots: a new type of stimulator of -1 translational frameshifting in bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

30 September 2017

1 reference

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Translational control in positive strand RNA plant viruses

30 September 2017

1 reference

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Cap-independent translation of plant viral RNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

An atypical RNA pseudoknot stimulator and an upstream attenuation signal for -1 ribosomal frameshifting of SARS coronavirus

30 September 2017

1 reference

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Torsional restraint: a new twist on frameshifting pseudoknots

30 September 2017

1 reference

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Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides

30 September 2017

1 reference

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Molecular biology of umbraviruses: phantom warriors

30 September 2017

1 reference

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1 reference

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The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting

30 September 2017

1 reference

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A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA

30 September 2017

1 reference

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Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs

30 September 2017

1 reference

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Pea enation mosaic and the vagaries of a plant virus

30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells

30 September 2017

1 reference

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The sequences of and distance between two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo

30 September 2017

1 reference

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rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift

30 September 2017

1 reference

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30 September 2017

1 reference

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Competition between frameshifting, termination and suppression at the frameshift site in the Escherichia coli release factor-2 mRNA.

30 September 2017

1 reference

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30 September 2017

1 reference

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Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon

30 September 2017

1 reference

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The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon

30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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1 reference

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28 June 2018

1 reference

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Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F.

28 June 2018

1 reference

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28 June 2018

1 reference

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28 June 2018

1 reference

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28 June 2018

1 reference

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28 June 2018

1 reference

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28 June 2018

1 reference

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28 June 2018

1 reference

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Modulation of ribosomal frameshifting frequency and its effect on the replication of Rous sarcoma virus.

21 September 2018

1 reference

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A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4737148

E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26578603

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV1241

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

PMCID

4737148