Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. (Q36571779)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18430935%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

title

Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing (English)

1 reference

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6 January 2020

2

1 reference

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6 January 2020

1

Asher D Cutter

1 reference

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6 January 2020

author name string

Nicole L Washington

series ordinal

3

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6 January 2020

language of work or name

English

0 references

publication date

1 April 2008

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6 January 2020

1 reference

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6 January 2020

volume

178

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6 January 2020

issue

4

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6 January 2020

page(s)

2093-2104

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Ecology of Caenorhabditis species

6 January 2020

cites work

1 reference

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The phylogenetic relationships of Caenorhabditis and other rhabditids

30 September 2017

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Trends, stasis, and drift in the evolution of nematode vulva development

30 September 2017

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Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals

30 September 2017

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The Evolution of Selfing in Arabidopsis thaliana

30 September 2017

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Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny

30 September 2017

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The species, sex, and stage specificity of a Caenorhabditis sex pheromone

30 September 2017

1 reference

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Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations

30 September 2017

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Diversity in mating behavior of hermaphroditic and male-female Caenorhabditis nematodes

30 September 2017

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Inferring the distribution of mutational effects on fitness in Drosophila

30 September 2017

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High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei

30 September 2017

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Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae

30 September 2017

1 reference

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A comparative study of sperm morphology, cytology and activation in Caenorhabditis elegans, Caenorhabditis remanei and Caenorhabditis briggsae

30 September 2017

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Estimating selection on nonsynonymous mutations

30 September 2017

1 reference

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Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans

30 September 2017

1 reference

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High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populations

30 September 2017

1 reference

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Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes

30 September 2017

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Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae

30 September 2017

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30 September 2017

1 reference

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prot4EST: translating expressed sequence tags from neglected genomes

30 September 2017

1 reference

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High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans.

30 September 2017

1 reference

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Evolutionary history of Caenorhabditis elegans inferred from microsatellites: evidence for spatial and temporal genetic differentiation and the occurrence of outbreeding

30 September 2017

1 reference

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Mate searching in Caenorhabditis elegans: a genetic model for sex drive in a simple invertebrate.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana

30 September 2017

1 reference

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Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

NEMBASE: a resource for parasitic nematode ESTs

30 September 2017

1 reference

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The origins of genome complexity

30 September 2017

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The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

30 September 2017

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On the genetic basis of variation and heterogeneity of DNA base composition

30 September 2017

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

30 September 2017

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Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock

30 September 2017

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Coalescence in a metapopulation with recurrent local extinction and recolonization

30 September 2017

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Effects of inbreeding on the genetic diversity of populations

30 September 2017

1 reference

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Molecular evolution and quantitative variation for chemosensory behaviour in the nematode genus Caenorhabditis

30 September 2017

1 reference

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Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.

30 September 2017

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Linkage limits the power of natural selection in Drosophila

30 September 2017

1 reference

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Regulation of sex-specific differentiation and mating behavior in C. elegans by a new member of the DM domain transcription factor family

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Fourfold faster rate of genome rearrangement in nematodes than in Drosophila

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Levels of DNA polymorphism vary with mating system in the nematode genus caenorhabditis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Why are there males in the hermaphroditic species Caenorhabditis elegans?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Breeding systems and genome evolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Deletional bias and the evolution of bacterial genomes

30 September 2017

1 reference

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Single nucleotide polymorphisms in wild isolates of Caenorhabditis elegans.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Genome sequence of the nematode C. elegans: a platform for investigating biology

30 September 2017

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PAML: a program package for phylogenetic analysis by maximum likelihood

30 September 2017

1 reference

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Natural variation and copulatory plug formation in Caenorhabditis elegans

30 September 2017

1 reference

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The effect of deleterious mutations on neutral molecular variation

30 September 2017

1 reference

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Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

30 September 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

30 September 2017

1 reference

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

30 September 2017

1 reference

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Evolutionary Rate at the Molecular Level

30 September 2017

1 reference

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The hitch-hiking effect of a favourable gene

30 September 2017

2 references

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30 September 2017

12 December 2020

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

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On the theory of partially inbreeding finite populations. I. Partial selfing

30 September 2017

1 reference

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The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

The 'effective number of codons' used in a gene

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

The selection-mutation-drift theory of synonymous codon usage

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Multilocus patterns of polymorphism and selection across the X chromosome of Caenorhabditis remanei

30 September 2017

1 reference

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Background selection in single genes may explain patterns of codon bias

28 June 2018

1 reference

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RETRACTED: Darwinian selection on a selfing locus

28 June 2018

1 reference

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Sure facts, speculations, and open questions about the evolution of transposable element copy number

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabditis remanei.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

The evolution of biased codon and amino acid usage in nematode genomes

21 September 2018

1 reference

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Genetic flexibility in the convergent evolution of hermaphroditism in Caenorhabditis nematodes.

21 September 2018

1 reference

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Variation in synonymous codon use and DNA polymorphism within the Drosophila genome.

21 September 2018

1 reference

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Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Sexual and temporal dynamics of molecular evolution in C. elegans development.

21 September 2018

1 reference

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High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

21 September 2018

1 reference

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Sperm-limited fecundity in nematodes: how many sperm are enough?

21 September 2018

1 reference

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INCA: synonymous codon usage analysis and clustering by means of self-organizing map.

21 September 2018

1 reference

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PartiGene--constructing partial genomes.

21 September 2018

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Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans

21 September 2018

1 reference

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Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

A gene expression map for Caenorhabditis elegans.

21 September 2018

1 reference

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Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323799

Transposable element number in mixed mating populations

21 October 2018

1 reference

12 December 2020

Rates and patterns of molecular evolution in inbred and outbred Arabidopsis

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12 December 2020

Subdivision and haplotype structure in natural populations of Arabidopsis lyrata

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12 December 2020

The proximate determinants of sex ratio in C. elegans populations

1 reference

12 December 2020

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

1 reference

12 December 2020

Rates of deleterious mutation and the evolution of sex in Caenorhabditis

1 reference

12 December 2020

Genetic variation for outcrossing among Caenorhabditis elegans isolates

1 reference

12 December 2020

Evolutionary rates in partially self-fertilizing species

1 reference

12 December 2020

NEUTRAL GENETIC DIVERSITY IN A METAPOPULATION WITH RECURRENT LOCAL EXTINCTION AND RECOLONIZATION

1 reference

12 December 2020

MUTATION LOAD AND THE SURVIVAL OF SMALL POPULATIONS.

1 reference

12 December 2020

The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations

1 reference

12 December 2020

10.1534/GENETICS.107.085787

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18430935%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18430935%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference