Nucleosome binding by the polymerase I transactivator upstream binding factor displaces linker histone H1. (Q36573052)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9315641%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

title

Nucleosome binding by the polymerase I transactivator upstream binding factor displaces linker histone H1 (English)

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6 November 2019

3

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6 November 2019

author name string

M Kermekchiev

series ordinal

1

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6 November 2019

J L Workman

series ordinal

2

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6 November 2019

language of work or name

English

0 references

publication date

1 October 1997

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Molecular and Cellular Biology

6 November 2019

published in

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6 November 2019

volume

17

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6 November 2019

issue

10

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6 November 2019

page(s)

5833-5842

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The Xenopus RNA polymerase I transcription factor, UBF, has a role in transcriptional enhancement distinct from that at the promoter.

6 November 2019

cites work

1 reference

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The linker histones and chromatin structure: new twists

30 September 2017

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Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro.

30 September 2017

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Structure of recombinant rat UBF by electron image analysis and homology modelling

30 September 2017

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Evidence for a shared structural role for HMG1 and linker histones B4 and H1 in organizing chromatin

30 September 2017

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Selective distribution of histone H1 variants and high mobility group proteins in chromosomes

30 September 2017

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30 September 2017

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Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae

30 September 2017

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Recognition of the Xenopus ribosomal core promoter by the transcription factor xUBF involves multiple HMG box domains and leads to an xUBF interdomain interaction

30 September 2017

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Functional differences between the two splice variants of the nucleolar transcription factor UBF: the second HMG box determines specificity of DNA binding and transcriptional activity.

30 September 2017

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Cisplatin-DNA adducts are molecular decoys for the ribosomal RNA transcription factor hUBF (human upstream binding factor).

30 September 2017

1 reference

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xUBF, an RNA polymerase I transcription factor, binds crossover DNA with low sequence specificity

30 September 2017

1 reference

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Stimulation of RNA polymerase II elongation by chromosomal protein HMG-14

30 September 2017

1 reference

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The RNA polymerase I transcription factor UBF is a sequence-tolerant HMG-box protein that can recognize structured nucleic acids

30 September 2017

1 reference

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Role of chromatin structure in the regulation of transcription by RNA polymerase II.

30 September 2017

1 reference

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Competition between linker histones and HMG1 for binding to four-way junction DNA: implications for transcription

30 September 2017

1 reference

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Linker histones H1 and H5 prevent the mobility of positioned nucleosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

The RNA polymerase I transactivator upstream binding factor requires its dimerization domain and high-mobility-group (HMG) box 1 to bend, wrap, and positively supercoil enhancer DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Promotion and regulation of ribosomal transcription in eukaryotes by RNA polymerase I.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Nucleosomal anatomy--where are the histones?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Experimental analysis of chromatin function in transcription control.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Interplay between chromatin structure and transcription.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Chromatin Structure: A Repeating Unit of Histones and DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Spheroid chromatin units (v bodies).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Sequence elements essential for function of the Xenopus laevis ribosomal DNA enhancers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Five intermediate complexes in transcription initiation by RNA polymerase II

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Enhancers for RNA polymerase I in mouse ribosomal DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Chromatin structure and gene activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Distribution of high mobility group proteins 1/2, E and 14/17 and linker histones H1 and H5 on transcribed and non-transcribed regions of chicken erythrocyte chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

xUBF contains a novel dimerization domain essential for RNA polymerase I transcription

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Chromatin as an essential part of the transcriptional mechanim

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Dual role of the nucleolar transcription factor UBF: trans-activator and antirepressor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Cooperative binding of the Xenopus RNA polymerase I transcription factor xUBF to repetitive ribosomal gene enhancers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Solenoidal model for superstructure in chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

In vitro analysis of transcription factor binding to nucleosomes and nucleosome disruption/displacement.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Virtually the entire Xenopus laevis rDNA multikilobase intergenic spacer serves to stimulate polymerase I transcription

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Chromatin transitions during early Xenopus embryogenesis: changes in histone H4 acetylation and in linker histone type

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Assembly of nucleosomes and chromatin in vitro

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Higher order structure in metaphase chromosomes. I. The 250 A fiber

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Sequence organization of the spacer DNA in a ribosomal gene unit of Xenopus laevis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Developmentally regulated expression of linker-histone variants in vertebrates.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

HMG17 is a chromatin-specific transcriptional coactivator that increases the efficiency of transcription initiation

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Histone-H1-dependent chromatin superstructures and the suppression of gene activity

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=232431

Action of micrococcal nuclease on chromatin and the location of histone H1

21 September 2018

1 reference

12 December 2020

Higher order structure in metaphase chromosomes. II. The relationship between the 250 A fiber, superbeads and beads-on-a-string

1 reference

12 December 2020

Chromatin organization re-viewed

1 reference

12 December 2020

H1-mediated repression of transcription factor binding to a stably positioned nucleosome

1 reference

12 December 2020

Enhancers and ribosomal gene spacers

1 reference

12 December 2020

Spacer sequences regulate transcription of ribosomal gene plasmids injected into Xenopus embryos

1 reference

12 December 2020

Short-range DNA looping by the Xenopus HMG-box transcription factor, xUBF

1 reference

12 December 2020

Effect of positive supercoiling on DNA compaction by nucleosome cores

1 reference

12 December 2020

DNA-binding properties of the yeast SWI/SNF complex

1 reference

12 December 2020

A transcriptional function for the repetitive ribosomal spacer in Xenopus laevis

1 reference

12 December 2020

The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBF

1 reference

12 December 2020

Analysis of nucleosome positioning by in vitro reconstitution

1 reference

12 December 2020

Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis

1 reference

12 December 2020

Overcoming a nucleosomal barrier to transcription

1 reference

12 December 2020

Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones

1 reference

12 December 2020

Reconstruction of transcriptionally active and silent chromatin

1 reference

12 December 2020

A histone octamer can step around a transcribing polymerase without leaving the template

1 reference

12 December 2020

Identifiers

DOI

10.1128/MCB.17.10.5833

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9315641%20AND%20SRC:MED&resulttype=core&format=json

release_e2rlpismubdyna4g4pgokidb4q

6 November 2019

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/e2rlpismubdyna4g4pgokidb4q

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9315641%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

PubMed publication ID

9315641

1 reference