Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes (Q36580555)

15 August 2017

Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes (English)

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15 August 2017

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Tae-Min Kim

1

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15 August 2017

Ruibin Xi

2

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15 August 2017

Lovelace J Luquette

3

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15 August 2017

Richard W Park

4

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15 August 2017

Mark D Johnson

5

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15 August 2017

Peter J Park

6

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15 August 2017

6 November 2012

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15 August 2017

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15 August 2017

23

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15 August 2017

2

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15 August 2017

217-227

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describes a project that uses

15 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Chromothripsis identifies a rare and aggressive entity among newly diagnosed multiple myeloma patients

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Pathogenesis and consequences of uniparental disomy in cancer

9 September 2017

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Detection of recurrent rearrangement breakpoints from copy number data

9 September 2017

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Making sense of cancer genomic data

9 September 2017

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Hallmarks of Cancer: The Next Generation

9 September 2017

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Massive genomic rearrangement acquired in a single catastrophic event during cancer development

9 September 2017

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The Claudin family and its role in cancer and metastasis

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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Microtubule-binding agents: a dynamic field of cancer therapeutics

9 September 2017

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9 September 2017

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Genomic architecture characterizes tumor progression paths and fate in breast cancer patients

9 September 2017

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The landscape of somatic copy-number alteration across human cancers

9 September 2017

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Identification of networks of co-occurring, tumor-related DNA copy number changes using a genome-wide scoring approach

9 September 2017

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An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

9 September 2017

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

9 September 2017

1 reference

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A network model of a cooperative genetic landscape in brain tumors

9 September 2017

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A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

9 September 2017

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Loss of tight junction barrier function and its role in cancer metastasis.

9 September 2017

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9 September 2017

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Integrated detection and population-genetic analysis of SNPs and copy number variation

9 September 2017

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

9 September 2017

1 reference

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Recurrent gene fusions in prostate cancer

9 September 2017

1 reference

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DNA repair proteins as molecular targets for cancer therapeutics

9 September 2017

1 reference

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Translating insights from the cancer genome into clinical practice

9 September 2017

1 reference

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Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

9 September 2017

1 reference

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Mutational and selective effects on copy-number variants in the human genome

9 September 2017

1 reference

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The impact of translocations and gene fusions on cancer causation

9 September 2017

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Patterns of somatic mutation in human cancer genomes

9 September 2017

1 reference

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Novel patterns of genome rearrangement and their association with survival in breast cancer

9 September 2017

1 reference

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Global variation in copy number in the human genome

9 September 2017

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

9 September 2017

1 reference

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Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma

9 September 2017

1 reference

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Array comparative genomic hybridization and its applications in cancer

9 September 2017

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Circular binary segmentation for the analysis of array-based DNA copy number data

9 September 2017

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Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

A census of human cancer genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Cytoscape: a software environment for integrated models of biomolecular interaction networks

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Chromosome aberrations in solid tumors

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Genomic microarrays in human genetic disease and cancer

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Progenetix.net: an online repository for molecular cytogenetic aberration data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Multiclass cancer diagnosis using tumor gene expression signatures

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Assembly of microarrays for genome-wide measurement of DNA copy number

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Use of chemotherapy plus a monoclonal antibody against HER2 for metastatic breast cancer that overexpresses HER2.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Gene ontology: tool for the unification of biology

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Signatures of mutation and selection in the cancer genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

A developmental taxonomy of glioblastoma defined and maintained by MicroRNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

A census of amplified and overexpressed human cancer genes

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Paclitaxel-resistant human ovarian cancer cells have mutant beta-tubulins that exhibit impaired paclitaxel-driven polymerization

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Association of epidermal growth factor receptor gene amplification with loss of chromosome 10 in human glioblastoma multiforme

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

Multiple microtubule alterations are associated with Vinca alkaloid resistance in human leukemia cells

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561863

20 September 2018

Identifiers

DOI

10.1101/GR.140301.112

1 reference

15 August 2017

1 reference

15 August 2017

1 reference