Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter. (Q36595446)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26892868%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter (English)

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8 March 2020

8

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8 March 2020

author name string

Hang Zhou

1

1 reference

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8 March 2020

Cao Zheng

2

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8 March 2020

Jianmei Su

3

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8 March 2020

Bo Chen

4

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8 March 2020

Yang Fu

5

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8 March 2020

Yuqun Xie

6

1 reference

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8 March 2020

Qing Tang

7

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8 March 2020

Jin He

9

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8 March 2020

language of work or name

English

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publication date

19 February 2016

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8 March 2020

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8 March 2020

volume

6

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8 March 2020

page(s)

20871

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Creative Commons Attribution 4.0 International

8 March 2020

copyright license

start time

19 February 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1038/srep20871

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cites work

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E88, a new cyclic-di-GMP class I riboswitch aptamer from Clostridium tetani, has a similar fold to the prototypical class I riboswitch, Vc2, but differentially binds to c-di-GMP analogs.

9 September 2017

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High-throughput identification of promoters and screening of highly active promoter-5'-UTR DNA region with different characteristics from Bacillus thuringiensis

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Diversity of Bacillus cereus group strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles

9 September 2017

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Cyclic di-GMP: the first 25 years of a universal bacterial second messenger

9 September 2017

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The metabolic regulation of sporulation and parasporal crystal formation in Bacillus thuringiensis revealed by transcriptomics and proteomics

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A decade of riboswitches

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Enzymatically active and inactive phosphodiesterases and diguanylate cyclases are involved in regulation of Motility or sessility in Escherichia coli CFT073

9 September 2017

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Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP.

9 September 2017

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Engineered allosteric ribozymes that sense the bacterial second messenger cyclic diguanosyl 5'-monophosphate.

9 September 2017

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You've come a long way: c-di-GMP signaling

9 September 2017

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Prospects for riboswitch discovery and analysis

9 September 2017

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Differential analogue binding by two classes of c-di-GMP riboswitches

9 September 2017

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Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1.

9 September 2017

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The bacterial second messenger c-di-GMP: mechanisms of signalling

9 September 2017

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Complete genome sequence of Bacillus thuringiensis subsp. chinensis strain CT-43.

9 September 2017

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Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches

9 September 2017

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Identification and characterization of CdgB, a diguanylate cyclase involved in developmental processes in Streptomyces coelicolor

9 September 2017

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c-di-GMP turn-over in Clostridium difficile is controlled by a plethora of diguanylate cyclases and phosphodiesterases

9 September 2017

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Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch

9 September 2017

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Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

9 September 2017

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Riboswitches and the RNA world

9 September 2017

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An allosteric self-splicing ribozyme triggered by a bacterial second messenger

9 September 2017

1 reference

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Complete genome sequence of Bacillus thuringiensis mutant strain BMB171.

9 September 2017

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Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division

9 September 2017

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Structural basis of ligand binding by a c-di-GMP riboswitch

9 September 2017

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A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

9 September 2017

1 reference

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Riboswitches in eubacteria sense the second messenger cyclic di-GMP

9 September 2017

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9 September 2017

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Chemical basis of glycine riboswitch cooperativity

9 September 2017

1 reference

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Structure and mechanism of a metal-sensing regulatory RNA

9 September 2017

1 reference

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Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis

9 September 2017

1 reference

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Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP.

9 September 2017

1 reference

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The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

9 September 2017

1 reference

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A glycine-dependent riboswitch that uses cooperative binding to control gene expression

9 September 2017

1 reference

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New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

9 September 2017

1 reference

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Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes

9 September 2017

1 reference

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Mfold web server for nucleic acid folding and hybridization prediction

9 September 2017

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Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus.

9 September 2017

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Rfam: an RNA family database

9 September 2017

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

9 September 2017

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Design criteria for synthetic riboswitches acting on transcription.

9 September 2017

1 reference

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Cyclic diguanylic acid and cellulose synthesis in Agrobacterium tumefaciens

30 September 2017

1 reference

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RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP

30 September 2017

1 reference

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Fluorescence-based reporter for gauging cyclic di-GMP levels in Pseudomonas aeruginosa

28 June 2018

1 reference

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Cyclic diguanylate inversely regulates motility and aggregation in Clostridium difficile

28 June 2018

1 reference

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A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis

28 June 2018

1 reference

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Novel genetic tools to tackle c-di-GMP-dependent signalling in Pseudomonas aeruginosa.

28 June 2018

1 reference

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20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Engineering of Bacillus subtilis strains to allow rapid characterization of heterologous diguanylate cyclases and phosphodiesterases

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

A post-translational, c-di-GMP-dependent mechanism regulating flagellar motility

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Bacillus thuringiensis: an impotent pathogen?

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Tandem riboswitch architectures exhibit complex gene control functions.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

New insights into regulation of the tryptophan biosynthetic operon in Gram-positive bacteria.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759541

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

20 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP20871

Activities of constitutive promoters in Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26892868

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP20871

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26892868%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26892868%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

26892868

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26892868%20AND%20SRC:MED&resulttype=core&format=json