fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control (Q36645725)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18296465%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control (English)

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3 January 2020

1

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3 January 2020

author name string

Robert L Bass

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18296465%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Yu Liang

series ordinal

3

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3 January 2020

language of work or name

English

0 references

publication date

22 February 2008

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3 January 2020

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3 January 2020

volume

24

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3 January 2020

issue

5

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3 January 2020

page(s)

629-636

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Divergent evolution of human p53 binding sites: cell cycle versus apoptosis

3 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Whole-genome cartography of estrogen receptor alpha binding sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

A global map of p53 transcription-factor binding sites in the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Identifying tissue-selective transcription factor binding sites in vertebrate promoters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Assessing computational tools for the discovery of transcription factor binding sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

WebLogo: A Sequence Logo Generator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Estimation of false discovery rates in multiple testing: application to gene microarray data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

GAPWM: a genetic algorithm method for optimizing a position weight matrix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

Truncated product method for combining P-values.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2376047

10.1093/BIOINFORMATICS/BTN009

20 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18296465%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/LiBL08

3 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18296465%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

18296465

1 reference