Nascent peptides that block protein synthesis in bacteria (Q36673038)

15 August 2017

Nascent peptides that block protein synthesis in bacteria (English)

1 reference

15 August 2017

Agata L Starosta

6

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Daniel N. Wilson

object named as

Daniel N Wilson

9

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author name string

Christopher J Woolstenhulme

1

1 reference

15 August 2017

Shankar Parajuli

2

1 reference

15 August 2017

David W Healey

3

1 reference

15 August 2017

Diana P Valverde

4

1 reference

15 August 2017

E Nicholas Petersen

5

1 reference

15 August 2017

Nicholas R Guydosh

7

1 reference

15 August 2017

W Evan Johnson

8

1 reference

15 August 2017

Allen R Buskirk

10

1 reference

15 August 2017

language of work or name

English

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publication date

19 February 2013

1 reference

Proceedings of the National Academy of Sciences of the United States of America

15 August 2017

1 reference

15 August 2017

110

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15 August 2017

10

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15 August 2017

E878-87

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Lys34 of translation elongation factor EF-P is hydroxylated by YfcM.

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The tmRNA ribosome-rescue system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Translational pausing ensures membrane targeting and cytoplasmic splicing of XBP1u mRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

PoxA, YjeK, and Elongation Factor P Coordinately Modulate Virulence and Drug Resistance in Salmonella enterica

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Divergent stalling sequences sense and control cellular physiology.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Structural insight into nascent polypeptide chain-mediated translational stalling.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Genetic identification of nascent peptides that induce ribosome stalling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

A ribosome-nascent chain sensor of membrane protein biogenesis in Bacillus subtilis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Programmed drug-dependent ribosome stalling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

A pause for thought along the co-translational folding pathway

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The tmRNA system for translational surveillance and ribosome rescue.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Crystal structure of elongation factor P from Thermus thermophilus HB8

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

The ribosomal exit tunnel functions as a discriminating gate

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

A specificity-enhancing factor for the ClpXP degradation machine

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Ribosome regulation by the nascent peptide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3593848

Instruction of translating ribosome by nascent peptide

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Molecular mechanism of drug-dependent ribosome stalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Activation of prokaryotic transcription through arbitrary protein-protein contacts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Flexible linkers leash the substrate binding domain of SspB to a peptide module that stabilizes delivery complexes with the AAA+ ClpXP protease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Two distinct components of release factor function uncovered by nucleophile partitioning analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

EF-P is essential for rapid synthesis of proteins containing consecutive proline residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1219536110

21 January 2018

Identifiers

DOI

10.1073/PNAS.1219536110

1 reference

15 August 2017

0 references

1 reference

15 August 2017

1 reference