A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling (Q36678466)

15 August 2017

title

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling (English)

1 reference

15 August 2017

Koehl P

1

1 reference

15 August 2017

Delarue M

series ordinal

2

1 reference

15 August 2017

publication date

1 February 1995

1 reference

Nature structural biology

15 August 2017

published in

1 reference

15 August 2017

volume

2

1 reference

15 August 2017

issue

2

1 reference

15 August 2017

page(s)

163-170

1 reference

Protein structure. Prediction of progress at last

15 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Predicting protein mutant energetics by self-consistent ensemble optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

A new approach to the rapid determination of protein side chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

A search for the most stable folds of protein chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Lattice neural network minimization. Application of neural network optimization for locating the global-minimum conformations of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

9 Modeling of side chains, loops, and insertions in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Modeling of globular proteins. A distance-based data search procedure for the construction of insertion/deletion regions and Pro----non-Pro mutations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

An algorithm for determining the conformation of polypeptide segments in proteins by systematic search

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Prediction of the folding of short polypeptide segments by uniform conformational sampling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Loop closure via bond scaling and relaxation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Multiple copy sampling in protein loop modeling: computational efficiency and sensitivity to dihedral angle perturbations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Prediction of protein side-chain conformation by packing optimization.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Automated modeling of coiled coils: application to the GCN4 dimerization region

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

A method to configure protein side-chains from the main-chain trace in homology modelling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Computational studies of ligand diffusion in globins: I. Leghemoglobin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Multiple copy simultaneous search and construction of ligands in binding sites: application to inhibitors of HIV-1 aspartic proteinase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Comparison of systematic search and database methods for constructing segments of protein structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

The Protein Data Bank: a computer-based archival file for macromolecular structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

A comprehensive set of sequence analysis programs for the VAX

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Polar and nonpolar atomic environments in the protein core: implications for folding and binding

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0295-163

31 March 2020

Identifiers

DOI

10.1038/NSB0295-163

1 reference

15 August 2017

1 reference