Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics (Q36689095)

15 August 2017

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title

Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics (English)

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15 August 2017

Linfeng Wu

1

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PubMed ID

17181475

15 August 2017

David K Han

series ordinal

2

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PubMed ID

17181475

15 August 2017

language of work or name

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1 December 2006

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Expert Review of Proteomics

15 August 2017

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15 August 2017

3

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15 August 2017

6

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15 August 2017

611-619

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A proteomics approach to understanding protein ubiquitination

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Global analysis of protein phosphorylation in yeast

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Finishing the euchromatic sequence of the human genome

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Global analysis of protein expression in yeast

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

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Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

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The human plasma proteome: history, character, and diagnostic prospects

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Alternative splicing and genome complexity

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Advances in proteomics data analysis and display using an accurate mass and time tag approach.

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Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

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Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

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Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

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A systematic characterization of mitochondrial proteome from human T leukemia cells

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Comprehensive proteomic analysis of the human spliceosome

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Proteome survey reveals modularity of the yeast cell machinery

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In-depth analysis of the membrane and cytosolic proteome of red blood cells

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2D-LC/MS techniques for the identification of proteins in highly complex mixtures

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Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning

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Identification and proteomic profiling of exosomes in human urine

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Identification of new Golgi complex specific proteins by direct organelle proteomic analysis.

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Nucleolar proteome dynamics

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Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy

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Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling

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Label-free semiquantitative peptide feature profiling of human breast cancer and breast disease sera via two-dimensional liquid chromatography-mass spectrometry.

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Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma.

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Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

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Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

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Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry

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Systematic comparison of a two-dimensional ion trap and a three-dimensional ion trap mass spectrometer in proteomics.

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A mammalian organelle map by protein correlation profiling

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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

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Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer

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Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

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Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

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Performance of a linear ion trap-Orbitrap hybrid for peptide analysis

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

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Targeted proteomics of low-level proteins in human plasma by LC/MSn: using human growth hormone as a model system

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Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap.

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Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

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Absolute quantification of multisite phosphorylation by selective reaction monitoring mass spectrometry: determination of inhibitory phosphorylation status of cyclin-dependent kinases

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Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

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Ultrasensitive and absolute quantification of the phosphoinositide 3-kinase/Akt signal transduction pathway by mass spectrometry

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

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Randomized sequence databases for tandem mass spectrometry peptide and protein identification.

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Circadian orchestration of the hepatic proteome

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Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

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Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

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Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR

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21 January 2018

Identifiers

DOI

10.1586/14789450.3.6.611

1 reference

15 August 2017

1 reference

PubMed ID

17181475