Reducing bias in bacterial community analysis of lower respiratory infections (Q36702276)

15 August 2017

Reducing bias in bacterial community analysis of lower respiratory infections (English)

1 reference

15 August 2017

1 reference

1 reference

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1

Geraint B Rogers

1 reference

Christopher J van der Gast

15 August 2017

11

object named as

Christopher J van der Gast

1 reference

15 August 2017

Leah Cuthbertson

2

1 reference

15 August 2017

Lucas R Hoffman

3

1 reference

15 August 2017

Peter A C Wing

4

1 reference

15 August 2017

Christopher Pope

5

1 reference

15 August 2017

Danny A P Hooftman

6

1 reference

15 August 2017

Andrew K Lilley

7

1 reference

15 August 2017

Anna Oliver

8

1 reference

15 August 2017

Mary P Carroll

9

1 reference

15 August 2017

Kenneth D Bruce

10

1 reference

15 August 2017

29 November 2012

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15 August 2017

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15 August 2017

7

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15 August 2017

4

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15 August 2017

697-706

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Selective quantification of viable Escherichia coli bacteria in biosolids by quantitative PCR with propidium monoazide modification.

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

The human oral microbiome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

A comparison of bacterial composition in diabetic ulcers and contralateral intact skin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Cystic fibrosis and innate immunity: how chloride channel mutations provoke lung disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Airway inflammation in cystic fibrosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Use of propidium monoazide for live/dead distinction in microbial ecology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

A meta-analysis of effects of Bt cotton and maize on nontarget invertebrates

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Molecular monitoring of disinfection efficacy using propidium monoazide in combination with quantitative PCR.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

The role of ecological theory in microbial ecology.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Bacterial activity in cystic fibrosis lung infections

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Human polymicrobial infections

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Changes in strategies for optimal antibacterial therapy in cystic fibrosis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Long-term follow up of changes in FEV1 and treatment intensity during Pseudomonas aeruginosa colonisation in patients with cystic fibrosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Selective detection of viable Helicobacter pylori using ethidium monoazide or propidium monoazide in combination with real-time polymerase chain reaction.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation?

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Discrimination between live and dead cellsin bacterial communities from environmental water samples analyzed by 454 pyrosequencing

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Mycobacterium avium subsp. paratuberculosis viability determination using F57 quantitative PCR in combination with propidium monoazide treatment.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

The exclusion of dead bacterial cells is essential for accurate molecular analysis of clinical samples

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Anthropogenic disturbance affects the structure of bacterial communities

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Assessing the diagnostic importance of nonviable bacterial cells in respiratory infections

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Application of real-time quantitative PCR for the detection of selected bacterial pathogens during municipal wastewater treatment

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Explaining the excess of rare species in natural species abundance distributions

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Acceleration of lung disease in children with cystic fibrosis after Pseudomonas aeruginosa acquisition

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Characterisation of the culturable heterotrophic bacterial community in a small eutrophic lake (Priest Pot).

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603400

Dynamics of Regional Distribution: The Core and Satellite Species Hypothesis

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.145

Dynamics of core and occasional species in the marine plankton: tintinnid ciliates in the north-west Mediterranean Sea

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.145

Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23190732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/23190732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Introduction to Meta-Analysis

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.145

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2012.145

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

PubMed publication ID

23190732

1 reference