NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model (Q36733115)

16 August 2017

NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model (English)

1 reference

16 August 2017

Tingwei Quan

1

1 reference

16 August 2017

Ting Zheng

2

1 reference

16 August 2017

Zhongqing Yang

3

1 reference

16 August 2017

Wenxiang Ding

4

1 reference

16 August 2017

Shiwei Li

5

1 reference

16 August 2017

Jing Li

6

1 reference

16 August 2017

Hang Zhou

7

1 reference

16 August 2017

Qingming Luo

8

1 reference

16 August 2017

Hui Gong

9

1 reference

16 August 2017

Shaoqun Zeng

10

1 reference

16 August 2017

language of work or name

English

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publication date

1 January 2013

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16 August 2017

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16 August 2017

3

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16 August 2017

1414

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Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported

16 August 2017

start time

2 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

High-throughput computer method for 3D neuronal structure reconstruction from the image stack of the Drosophila brain and its applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Automatic extraction of nuclei centroids of mouse embryonic cells from fluorescence microscopy images

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Serial two-photon tomography for automated ex vivo mouse brain imaging

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Computational methods and challenges for large-scale circuit mapping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

The big and the small: challenges of imaging the brain's circuits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Automated reconstruction of neuronal morphology based on local geometrical and global structural models

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Neuronal tracing for connectomic studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Neuron tracing in perspective

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Improved automatic detection and segmentation of cell nuclei in histopathology images

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

A 3D digital atlas of C. elegans and its application to single-cell analyses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Adult SVZ stem cells lie in a vascular niche: a quantitative analysis of niche cell-cell interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Fast, bias-free algorithm for tracking single particles with variable size and shape.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

3D cell nuclei segmentation based on gradient flow tracking

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

A perivascular niche for brain tumor stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Optimally sparse representation in general (nonorthogonal) dictionaries via ℓ1 minimization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Advances in automated 3-D image analyses of cell populations imaged by confocal microscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Detection and segmentation of cell nuclei in virtual microscopy images: a minimum-model approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Automatic reconstruction of neural morphologies with multi-scale tracking

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Three-dimensional segmentation of nuclei and mitotic chromosomes for the study of cell divisions in live Drosophila embryos.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

A broadly applicable 3-D neuron tracing method based on open-curve snake.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Principal curves as skeletons of tubular objects: locally characterizing the structures of axons

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

An automated method for cell detection in zebrafish.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

3D-catFISH: a system for automated quantitative three-dimensional compartmental analysis of temporal gene transcription activity imaged by fluorescence in situ hybridization.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3613804

Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP01414

Enhancing Sparsity by Reweighted ℓ 1 Minimization

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP01414

Nonlinear Regression Analysis and Its Applications

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP01414

Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23546385

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23546385

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A brief history of neuronal reconstruction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23546385

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP01414

1 reference

16 August 2017

1 reference

16 August 2017

PubMed publication ID

23546385

1 reference