Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes (Q36766285)

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scientific article published on 9 February 2011

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English	Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes	scientific article published on 9 February 2011

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scholarly article

1 reference

Europe PubMed Central

16 August 2017

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes (English)

1 reference

Europe PubMed Central

16 August 2017

Christian Brander

object named as

Christian Brander

4

0 references

Alessandro Sette

6

object named as

Alessandro Sette

1 reference

Europe PubMed Central

16 August 2017

5

object named as

Bjoern Peters

1 reference

Europe PubMed Central

16 August 2017

2

object named as

John Sidney

1 reference

Europe PubMed Central

16 August 2017

Jason A Greenbaum

1

object named as

Jason Greenbaum

1 reference

Europe PubMed Central

16 August 2017

3

object named as

Jolan Chung

1 reference

Europe PubMed Central

16 August 2017

language of work or name

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publication date

9 February 2011

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

63

1 reference

Europe PubMed Central

16 August 2017

6

1 reference

Europe PubMed Central

16 August 2017

325-335

1 reference

Europe PubMed Central

16 August 2017

https://scigraph.springernature.com/pub.10.1007/s00251-011-0513-0

0 references

Divergent motifs but overlapping binding repertoires of six HLA-DQ molecules frequently expressed in the worldwide human population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Molecular determinants of T cell epitope recognition to the common Timothy grass allergen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Definition of MHC supertypes through clustering of MHC peptide-binding repertoires

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

HLA class I supertypes: a revised and updated classification

1 reference

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29 September 2017

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

1 reference

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29 September 2017

Extensive HLA class I allele promiscuity among viral CTL epitopes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

HLA class I binding promiscuity of the CD8 T-cell epitopes of human papillomavirus type 16 E6 protein

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29 September 2017

A framework to sub-type HLA supertypes.

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29 September 2017

Identifiying human MHC supertypes using bioinformatic methods.

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29 September 2017

Detailed analysis of the effects of Glu/Lys beta69 human leukocyte antigen-DP polymorphism on peptide-binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

HLA-DP4, the most frequent HLA II molecule, defines a new supertype of peptide-binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

The HLA molecules DQA1*0501/B1*0201 and DQA1*0301/B1*0302 share an extensive overlap in peptide binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Binding interactions between peptides and proteins of the class II major histocompatibility complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Structural principles of MHC class II antigen presentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Several common HLA-DR types share largely overlapping peptide binding repertoires

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Definition of an HLA-A3-like supermotif demonstrates the overlapping peptide-binding repertoires of common HLA molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Analysis of peptide-binding motifs for two disease associated HLA-DR13 alleles using an M13 phage display library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Analysis of anchor residues in a naturally processed HLA-DR53 ligand

1 reference

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29 September 2017

Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide

1 reference

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29 September 2017

Binding of myelin basic protein peptides to human histocompatibility leukocyte antigen class II molecules and their recognition by T cells from multiple sclerosis patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

The three-dimensional structure of peptide-MHC complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Naturally processed peptides from two disease-resistance-associated HLA-DR13 alleles show related sequence motifs and the effects of the dimorphism at position 86 of the HLA-DR beta chain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Definition of a DQ3.1-specific binding motif.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Allelic variation in the DR subregion of the human major histocompatibility complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Polymorphism of human Ia antigens: gene conversion between two DR beta loci results in a new HLA-D/DR specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

Natural peptides isolated from Gly86/Val86-containing variants of HLA-DR1, -DR11, -DR13, and -DR52.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

29 September 2017

A new categorization of HLA DR alleles on a functional basis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

27 June 2018

A roadmap for HLA-A, HLA-B, and HLA-C peptide binding specificities.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

27 June 2018

Natural peptide ligand motifs of two HLA molecules associated with myasthenia gravis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

27 June 2018

HLA-DR3 molecules can bind peptides carrying two alternative specific submotifs

1 reference

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27 June 2018

Development of high potency universal DR-restricted helper epitopes by modification of high affinity DR-blocking peptides.

1 reference

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27 June 2018

Strong similarities in antigen fine specificity among DRB1* 1302-restricted tetanus toxin tt830-843-specific TCRs in spite of highly heterogeneous CDR3.

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Structural requirements for binding of an immunodominant myelin basic protein peptide to DR2 isotypes and for its recognition by human T cell clones

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27 June 2018

Characterization of the specificity of peptide binding to four DR haplotypes

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27 June 2018

On the interaction of promiscuous antigenic peptides with different DR alleles. Identification of common structural motifs

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27 June 2018

Truncation analysis of several DR binding epitopes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

27 June 2018

Identifying HLA supertypes by learning distance functions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

5 September 2018

In silico grouping of peptide/HLA class I complexes using structural interaction characteristics.

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5 September 2018

Energetics and cooperativity of the hydrogen bonding and anchor interactions that bind peptides to MHC class II protein

1 reference

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5 September 2018

Definition of supertypes for HLA molecules using clustering of specificity matrices.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626422

5 September 2018

Extensive major histocompatibility complex class I binding promiscuity for Mycobacterium tuberculosis TB10.4 peptides and immune dominance of human leucocyte antigen (HLA)-B*0702 and HLA-B*0801 alleles in TB10.4 CD8 T-cell responses

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Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

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4 December 2018

A roadmap for HLA-DR peptide binding specificities

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

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HLA DR4w4-binding motifs illustrate the biochemical basis of degeneracy and specificity in peptide-DR interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA supertypes and supermotifs: a functional perspective on HLA polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural principles that govern the peptide-binding motifs of class I MHC molecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Different modes of peptide interaction enable HLA-DQ and HLA-DR molecules to bind diverse peptide repertoires

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A geometric study of the amino acid sequence of class I HLA molecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DRB1*0301 molecules recognize a structural motif distinct from the one recognized by most DR beta 1 alleles

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In Silico Identification of Supertypes for Class II MHCs

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compression of functional space in HLA-A sequence diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/21305276

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00251-011-0513-0

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

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