Survey of variation in human transcription factors reveals prevalent DNA binding changes (Q36781032)

16 August 2017

Survey of variation in human transcription factors reveals prevalent DNA binding changes (English)

1 reference

16 August 2017

4

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2 June 2020

Stephen S. Gisselbrecht

5

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2 June 2020

Sachi Inukai

10

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2 June 2020

Chris Cotsapas

15

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2 June 2020

18

Manolis Kellis

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2 June 2020

20

Marc Vidal

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2 June 2020

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Mark J Daly

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2 June 2020

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Martha L Bulyk

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2 June 2020

author name string

Luis A Barrera

1

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2 June 2020

Anastasia Vedenko

2

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2 June 2020

Jesse V Kurland

3

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2 June 2020

Elizabeth J Rossin

6

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2 June 2020

Jaie Woodard

7

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2 June 2020

Luca Mariani

8

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2 June 2020

Kian Hong Kock

9

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2 June 2020

Trevor Siggers

11

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2 June 2020

Leila Shokri

12

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2 June 2020

Raluca Gordân

13

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2 June 2020

Nidhi Sahni

14

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2 June 2020

Tong Hao

16

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2 June 2020

Song Yi

17

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2 June 2020

David E Hill

21

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2 June 2020

language of work or name

English

0 references

publication date

24 March 2016

1 reference

16 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27013732%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

351

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2 June 2020

issue

6280

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2 June 2020

page(s)

1450-1454

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Human gene-centered transcription factor networks for enhancers and disease variants

2 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Identification of a large set of rare complete human knockouts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

UniProt: a hub for protein information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Systematic identification of trans eQTLs as putative drivers of known disease associations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Epistatic selection between coding and regulatory variation in human evolution and disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

A map of human genome variation from population-scale sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

A method and server for predicting damaging missense mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

A census of human transcription factors: function, expression and evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Hoxd13 binds in vivo and regulates the expression of genes acting in key pathways for early limb and skeletal patterning.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

SIFT: Predicting amino acid changes that affect protein function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Developmental patterning genes and their conserved functions: from model organisms to humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Leber congenital amaurosis caused by a homozygous mutation (R90W) in the homeodomain of the retinal transcription factor CRX: direct evidence for the involvement of CRX in the development of photoreceptor function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Mutations in the cone-rod homeobox gene are associated with the cone-rod dystrophy photoreceptor degeneration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

29 September 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Profile hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

TarO: a target optimisation system for structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Structure of the human FOXO4-DBD-DNA complex at 1.9 Å resolution reveals new details of FOXO binding to the DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Structure of the FoxM1 DNA-recognition domain bound to a promoter sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Structure of the forkhead domain of FOXP2 bound to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Crystal structure of the human FOXK1a-DNA complex and its implications on the diverse binding specificity of winged helix/forkhead proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Crystal structure of the human FOXO3a-DBD/DNA complex suggests the effects of post-translational modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

DNA recognition by Cys2His2 zinc finger proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

SIFT web server: predicting effects of amino acid substitutions on proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Identification of deleterious mutations within three human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

MutationTaster evaluates disease-causing potential of sequence alterations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Predicting the functional impact of protein mutations: application to cancer genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

PON-P: integrated predictor for pathogenicity of missense variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Diversity and complexity in DNA recognition by transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Widespread macromolecular interaction perturbations in human genetic disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Determination and inference of eukaryotic transcription factor sequence specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Evaluation of methods for modeling transcription factor sequence specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Uncovering networks from genome-wide association studies via circular genomic permutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD2257

Joining the fingers: a HOXD13 Story

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4825693

20 October 2018

Identifiers

DOI

10.1126/SCIENCE.AAD2257

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27013732%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27013732%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

27013732

1 reference