The cis-acting replication elements define human enterovirus and rhinovirus species. (Q36800481)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18541697%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

The cis-acting replication elements define human enterovirus and rhinovirus species (English)

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8 January 2020

2

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8 January 2020

Samuel Cordey

1

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8 January 2020

author name string

Thomas Junier

3

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8 January 2020

Evgeny M Zdobnov

4

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8 January 2020

Laurent Kaiser

5

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8 January 2020

Caroline Tapparel

6

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8 January 2020

language of work or name

English

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publication date

9 June 2008

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8 January 2020

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8 January 2020

volume

14

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8 January 2020

page(s)

1568-1578

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8 January 2020

issue

8

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Distinguishing molecular features and clinical characteristics of a putative new rhinovirus species, human rhinovirus C (HRV C).

8 January 2020

cites work

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A diverse group of previously unrecognized human rhinoviruses are common causes of respiratory illnesses in infants

29 September 2017

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Human rhinovirus type 14 gain-of-function mutants for oriI utilization define residues of 3C(D) and 3Dpol that contribute to assembly and stability of the picornavirus VPg uridylylation complex

29 September 2017

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Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children

29 September 2017

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Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity

29 September 2017

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New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features

29 September 2017

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Cellular protein modification by poliovirus: the two faces of poly(rC)-binding protein

29 September 2017

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Characterisation of a newly identified human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis

29 September 2017

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Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

29 September 2017

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Picornavirus genome replication: assembly and organization of the VPg uridylylation ribonucleoprotein (initiation) complex

29 September 2017

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Frequent detection of human rhinoviruses, paramyxoviruses, coronaviruses, and bocavirus during acute respiratory tract infections

29 September 2017

1 reference

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Intramolecular and intermolecular uridylylation by poliovirus RNA-dependent RNA polymerase

29 September 2017

1 reference

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Structural and functional characterization of the coxsackievirus B3 CRE(2C): role of CRE(2C) in negative- and positive-strand RNA synthesis

29 September 2017

1 reference

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An authentic 3' noncoding region is necessary for efficient poliovirus replication

29 September 2017

1 reference

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3'-Terminal sequence in poliovirus negative-strand templates is the primary cis-acting element required for VPgpUpU-primed positive-strand initiation

29 September 2017

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Fast and reliable prediction of noncoding RNAs

29 September 2017

1 reference

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High-resolution structure of a picornaviral internal cis-acting RNA replication element (cre).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

VP1 sequencing of all human rhinovirus serotypes: insights into genus phylogeny and susceptibility to antiviral capsid-binding compounds

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Cell-dependent role for the poliovirus 3' noncoding region in positive-strand RNA synthesis

29 September 2017

1 reference

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Mfold web server for nucleic acid folding and hybridization prediction

29 September 2017

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Functional Dissection of a Poliovirus cis -Acting Replication Element [PV- cre (2C)]: Analysis of Single- and Dual- cre Viral Genomes and Proteins That Bind Specifically to PV- cre RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Poliovirus cre (2C)-Dependent Synthesis of VPgpUpU Is Required for Positive- but Not Negative-Strand RNA Synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Sequence requirements for viral RNA replication and VPg uridylylation directed by the internal cis-acting replication element (cre) of human rhinovirus type 14.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Biochemical and genetic studies of the initiation of human rhinovirus 2 RNA replication: identification of a cis-replicating element in the coding sequence of 2A(pro).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Structure of an RNA hairpin from HRV-14

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Phenotypic characterization of three phylogenetically conserved stem-loop motifs in the mengovirus 3' untranslated region

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Remodeling the endoplasmic reticulum by poliovirus infection and by individual viral proteins: an autophagy-like origin for virus-induced vesicles

29 September 2017

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Identification of a cis-acting replication element within the poliovirus coding region

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

A cysteine-rich motif in poliovirus protein 2C(ATPase) is involved in RNA replication and binds zinc in vitro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

A coding RNA sequence acts as a replication signal in cardioviruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Switch from translation to RNA replication in a positive-stranded RNA virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Protein-primed RNA synthesis by purified poliovirus RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Replication-competent picornaviruses with complete genomic RNA 3' noncoding region deletions.

29 September 2017

1 reference

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Two functional complexes formed by KH domain containing proteins with the 5' noncoding region of poliovirus RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Kissing of the two predominant hairpin loops in the coxsackie B virus 3' untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Capsid coding sequence is required for efficient replication of human rhinovirus 14 RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Biochemical and genetic evidence for a pseudoknot structure at the 3' terminus of the poliovirus RNA genome and its role in viral RNA amplification

29 September 2017

1 reference

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Poliovirus protein 2C has ATPase and GTPase activities

29 September 2017

1 reference

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Poliovirus RNA synthesis utilizes an RNP complex formed around the 5'-end of viral RNA.

29 September 2017

1 reference

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Biochemical studies on poliovirus polypeptide 2C: evidence for ATPase activity

29 September 2017

1 reference

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The clinical impact of human respiratory virus infections

29 September 2017

1 reference

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Primary structure, gene organization and polypeptide expression of poliovirus RNA.

29 September 2017

1 reference

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Evidence for functional protein interactions required for poliovirus RNA replication

29 September 2017

1 reference

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A functional ribonucleoprotein complex forms around the 5' end of poliovirus RNA.

27 June 2018

1 reference

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A recently identified rhinovirus genotype is associated with severe respiratory-tract infection in children in Germany.

27 June 2018

1 reference

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MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005.

5 September 2018

1 reference

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ATP hydrolysis and AMP kinase activities of nonstructural protein 2C of human parechovirus 1.

5 September 2018

1 reference

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Genetic evidence for an interaction between a picornaviral cis-acting RNA replication element and 3CD protein

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

The poliovirus 2C cis-acting replication element-mediated uridylylation of VPg is not required for synthesis of negative-sense genomes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2491478

Analysis of the cloverleaf element in a human rhinovirus type 14/poliovirus chimera: correlation of subdomain D structure, ternary protein complex formation and virus replication

5 September 2018

1 reference

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Genetic clustering of all 102 human rhinovirus prototype strains: serotype 87 is close to human enterovirus 70.

5 September 2018

1 reference

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Poly (rC) binding protein 2 forms a ternary complex with the 5'-terminal sequences of poliovirus RNA and the viral 3CD proteinase.

5 September 2018

1 reference

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Rhinoviruses: a Numbering System

5 September 2018

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12 December 2020

The human rhinovirus internal cis-acting replication element (cre) exhibits disparate properties among serotypes

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12 December 2020

A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses

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12 December 2020

Genetic analysis of an NTP-binding motif in poliovirus polypeptide 2C

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12 December 2020

Membrane rearrangement and vesicle induction by recombinant poliovirus 2C and 2BC in human cells

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12 December 2020

Identifiers

DOI

10.1261/RNA.1031408

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18541697%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18541697%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1 reference