Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome (Q36814248)

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scientific article published on 26 March 2013

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English	Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome	scientific article published on 26 March 2013

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scholarly article

1 reference

Europe PubMed Central

16 August 2017

Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome (English)

1 reference

Europe PubMed Central

16 August 2017

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Joanna Sztuba-Solińska

1

object named as

Joanna Sztuba-Solinska

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Europe PubMed Central

16 August 2017

author name string

Tadahisa Teramoto

2

1 reference

Europe PubMed Central

16 August 2017

Jason W Rausch

3

1 reference

Europe PubMed Central

16 August 2017

Bruce A Shapiro

4

1 reference

Europe PubMed Central

16 August 2017

Radhakrishnan Padmanabhan

5

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Europe PubMed Central

16 August 2017

Stuart F J Le Grice

6

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Europe PubMed Central

16 August 2017

language of work or name

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publication date

26 March 2013

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Europe PubMed Central

16 August 2017

Nucleic Acids Research

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Europe PubMed Central

16 August 2017

41

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Europe PubMed Central

16 August 2017

5075-5089

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Europe PubMed Central

16 August 2017

9

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Europe PubMed Central

16 August 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

7 November 2016

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April 2022 Public Data File from Crossref

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1 reference

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1 reference

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Attenuation of loop-receptor interactions with pseudoknot formation

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1 reference

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Genome cyclization as strategy for flavivirus RNA replication

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Structural domains within the 3' untranslated region of Turnip crinkle virus.

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Predicting U-turns in ribosomal RNA with comparative sequence analysis

1 reference

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12 December 2020

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RNA folding pathway functional intermediates: their prediction and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT203

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

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