The automation and evaluation of nested clade phylogeographic analysis (Q36837229)

16 August 2017

The automation and evaluation of nested clade phylogeographic analysis (English)

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16 August 2017

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2

Mark A Beaumont

1 reference

16 August 2017

Mahesh Panchal

1

1 reference

PubMed ID

17542853

16 August 2017

language of work or name

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1 June 2007

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16 August 2017

15

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inferred from page(s)

published in

Evolution

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16 August 2017

61

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16 August 2017

6

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16 August 2017

1466-1480

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Median-joining networks for inferring intraspecific phylogenies

16 August 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

On the use of haplotype phylogeny to detect disease susceptibility loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Abdominal pigmentation variation in drosophila polymorpha: geographic variation in the trait, and underlying phylogeography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Mitochondrial DNA and human evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Evaluating intraspecific "network" construction methods using simulated sequence data: do existing algorithms outperform the global maximum parsimony approach?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Root probabilities for intraspecific gene trees under neutral coalescent theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Estimating admixture proportions with microsatellites: comparison of methods based on simulated data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

TCS: a computer program to estimate gene genealogies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Linear habitats and the nested clade analysis: an empirical evaluation of geographic versus river distances using an Ozark crayfish (Decapoda: Cambaridae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Incongruent nuclear and mitochondrial phylogeographic patterns in the Timarcha goettingensis species complex (Coleoptera, Chrysomelidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

The evolutionary history of the genus Timarcha (Coleoptera, Chrysomelidae) inferred from mitochondrial COII gene and partial 16S rDNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Sequence, secondary structure and phylogenetic analyses of the ribosomal internal transcribed spacer 2 (ITS2) in the Timarcha leaf beetles (Coleoptera: Chrysomelidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

The study of structured populations--new hope for a difficult and divided science

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Statistical phylogeography

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Phylogeography of the Vosges mountains populations of Gonioctena pallida (Coleoptera: Chrysomelidae): a nested clade analysis of mitochondrial DNA haplotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Population genetic structure of the toad Bufo woodhousii: an empirical assessment of the effects of haplotype extinction on nested cladistic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

The automation of Nested Clade Phylogeographic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Nucleotide substitution rate of mammalian mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Intraspecific gene genealogies: trees grafting into networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Transmission/disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Out of Africa again and again.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Haplotype trees and modern human origins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Tree scanning: a method for using haplotype trees in phenotype/genotype association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Species status and phylogeography of two closely related Coptolabrus species (Coleoptera: Carabidae) in South Korea inferred from mitochondrial and nuclear gene sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Nested clade analysis statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian Lizard

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2007.00124.X

10.1111/J.1558-5646.2007.00124.X

21 January 2018

Identifiers

DOI

1 reference

16 August 2017

1 reference

PubMed ID

17542853